GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
         (81 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q95Q02 Cluster: Putative uncharacterized protein; n=2; ...    32   1.9  
UniRef50_UPI0000E49692 Cluster: PREDICTED: similar to Ran-bindin...    31   4.4  
UniRef50_A0BKL4 Cluster: Chromosome undetermined scaffold_112, w...    31   4.4  
UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1; Dictyo...    30   7.7  

>UniRef50_Q95Q02 Cluster: Putative uncharacterized protein; n=2;
            cellular organisms|Rep: Putative uncharacterized protein
            - Caenorhabditis elegans
          Length = 2870

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/24 (50%), Positives = 20/24 (83%)

Query: 49   KNYNPERYKKNVKLNFLSVNGNEM 72
            KNY+PE  + NV+L+ LSV+G+++
Sbjct: 2804 KNYHPEESRSNVQLHVLSVDGSDL 2827


>UniRef50_UPI0000E49692 Cluster: PREDICTED: similar to Ran-binding
          protein 10; n=1; Strongylocentrotus purpuratus|Rep:
          PREDICTED: similar to Ran-binding protein 10 -
          Strongylocentrotus purpuratus
          Length = 629

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 21 STSSINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNVKLNFLSVNGNEMRCPYK 77
          ++S+IN   E+ DP + +     + N D+   P  +    K  F+ ++ N +R  YK
Sbjct: 8  TSSAINQNTENTDPTDRLKRLYPVVNEDETPLPRTWNPRTKSTFIGLSQNNLRLHYK 64


>UniRef50_A0BKL4 Cluster: Chromosome undetermined scaffold_112,
          whole genome shotgun sequence; n=1; Paramecium
          tetraurelia|Rep: Chromosome undetermined scaffold_112,
          whole genome shotgun sequence - Paramecium tetraurelia
          Length = 89

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 22 TSSINVYPESVDPVEAVTVYCLLFNLDKNYNPE 54
          ++ INV  E++  V  + +   L+N D++YNP+
Sbjct: 32 SAPINVRDENIQGVFRILIQAFLYNFDRDYNPQ 64


>UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1;
          Dictyostelium discoideum AX4|Rep: RNA polymerase III
          subunit - Dictyostelium discoideum AX4
          Length = 345

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 48 DKNYNPERYKKNVKLNFLSVNGNEM 72
          D ++N  R+K+N K+N LS + NE+
Sbjct: 47 DNSFNLNRFKENFKINILSESANEL 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,611,844
Number of Sequences: 1657284
Number of extensions: 3020764
Number of successful extensions: 8120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8116
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 575,637,011
effective HSP length: 60
effective length of query: 21
effective length of database: 476,199,971
effective search space: 10000199391
effective search space used: 10000199391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)