GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    31   0.014
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   1.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   1.7  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   1.7  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    24   2.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   2.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    23   3.8  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        23   5.1  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    23   6.7  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    23   6.7  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    23   6.7  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    22   8.9  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    22   8.9  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    22   8.9  

>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
          subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 31.5 bits (68), Expect = 0.014
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 18 LDRSTSSINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNVKLNFLSVNGNEM 72
          +DRS + I+V  + V  V +V      F+ D  ++ +++KKN+K++  S++   M
Sbjct: 4  VDRSRTEISVLSDRVTDVGSVDFPGYYFDEDNIWDLDKFKKNLKVSITSLDQETM 58


>SPBC4.03c |||COPII-coated vesicle component Sfb3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 50 NY-NPERYKKNVKLNFLSVNGNEM 72
          NY NPE Y++NV  N  S  G E+
Sbjct: 9  NYGNPETYRQNVAGNIASYGGPEI 32


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 40   VYCLLFNLDKNYNPER-YKKNVKLNFLSVNGNEMRCPYKS 78
            V C+  N +K       +  N+K NFL+   +E+R P+ S
Sbjct: 1732 VVCIDINDEKEAREAAMHAVNLKTNFLANMSHELRTPFSS 1771


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 52  NPERYKKNVKLNFLSVNGNEMRCP 75
           NP  + K +K+ FL+  G+E  CP
Sbjct: 301 NPLIWAKYLKIEFLTHYGSEFYCP 324


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 28  YPESVDPVEAVTVYC-LLFNLDKNYNPE 54
           +P  +DPV+A  V+C + F   K+ +PE
Sbjct: 159 HPSLLDPVDAKHVHCPVCFLCSKDEDPE 186


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 13  CEGPTLDRSTSSINVYPES---VDPVEAVTVYC 42
           CE P L    +  NVY      VD +E +TV+C
Sbjct: 268 CEFPDLSLKINEDNVYASQIHLVDILEILTVHC 300


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 28  YPESVDPVEAVTVYCL 43
           YP ++DP +AV++ C+
Sbjct: 195 YPFTLDPFQAVSIACI 210


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 18   LDRSTSSINVYPESVDPVEAVTV 40
            ++R TS++   P  +DP E VT+
Sbjct: 1064 IERKTSTMLNIPNVLDPEETVTI 1086


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 46  NLDKNYNPERYKKNVKLNFLSVNGNEMR 73
           +LDK Y+    KK+ K NF      E R
Sbjct: 128 HLDKTYSSIDSKKDFKYNFPKTQAPEWR 155


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 18  LDRSTSSINVYPESVDPVEAVTVYCLLFNLDKNY 51
           LDR TS +  + +S    E + V+ +  +L K Y
Sbjct: 155 LDRLTSGLMFFSKSPKAAEEMRVHMISKSLKKEY 188


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 10  CDKCEGPTLDRSTSSIN 26
           C  C G TL ++T SIN
Sbjct: 271 CPSCGGNTLIKTTCSIN 287


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 16  PTLDRSTSSINVYPESVDPVEAVTVYCLLFNLDKNYNP 53
           PT  +S    +   +S D    +T    LF L K+Y+P
Sbjct: 76  PTNPKSEEDPSQICQSFDESNIITPSKYLFPLSKDYSP 113


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 41  YCLLFNLDKNYNPERYKKNVKLNFLS 66
           +CL    + N +PE   +N+ L+FLS
Sbjct: 617 HCLKDGWELNSSPEVNSENLLLSFLS 642


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 10/42 (23%), Positives = 24/42 (57%)

Query: 35  VEAVTVYCLLFNLDKNYNPERYKKNVKLNFLSVNGNEMRCPY 76
           V A+T+   L++L K +  + YK + +++ +++    +R  Y
Sbjct: 304 VNAITIDFFLWDLAKEWQAKGYKPSTQVDEVTIPCIRVRSIY 345


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,736
Number of Sequences: 5004
Number of extensions: 14306
Number of successful extensions: 34
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 14
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)