GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0166 - 6065088-6065093,6066671-6068544,6068643-6069548,606...    26   3.3  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    25   5.8  
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261...    25   5.8  

>10_02_0166 -
           6065088-6065093,6066671-6068544,6068643-6069548,
           6069623-6069676,6069751-6069808
          Length = 965

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 41  YCLLFNLDKNYNPERYKKNV--KLNFLSVNGNEMRCPYK 77
           YC+  NLD   +  RY   V  ++  + V GNE+R  ++
Sbjct: 238 YCVTLNLDNRLDQRRYNVPVTSEVAAVWVEGNELRTHFE 276


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 57  KKNVKLNFLSVNGNEMRCPYKSRTS 81
           KK V+L      G+E+RC  K+RT+
Sbjct: 375 KKCVQLRNQDAKGSELRCAEKTRTT 399


>02_05_1345 +
          35825552-35825834,35825914-35826022,35826098-35826137,
          35827481-35827522,35827605-35827694,35828400-35828470,
          35829375-35829463,35829583-35829652,35829898-35830048,
          35830146-35830235,35830549-35830647
          Length = 377

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 16 PTLDRSTSSINVYPESVDPVEAVT 39
          P L RS SSI++ P S+ P  A+T
Sbjct: 35 PRLARSDSSISMPPPSLAPTGAIT 58


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,008
Number of Sequences: 37544
Number of extensions: 71264
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 3
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)