GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33514| Best HMM Match : DUF503 (HMM E-Value=1.6)                    27   2.1  
SB_11710| Best HMM Match : Urease_alpha (HMM E-Value=0)                27   2.8  
SB_6423| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   3.7  
SB_21360| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      25   8.5  

>SB_33514| Best HMM Match : DUF503 (HMM E-Value=1.6)
          Length = 223

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 14 EGPTLDRSTSSINV-YPESVDPVEAVTVYCLL-FNLDKNYNPERYKKNVKL 62
          E  T  R  S+I+V   E+   V  V+  C   F LDKNY  +R   N+ +
Sbjct: 12 ENYTKQRGESNISVRLDENYTKVRGVSNMCQKSFRLDKNYTKQRGVSNISV 62


>SB_11710| Best HMM Match : Urease_alpha (HMM E-Value=0)
          Length = 726

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/56 (32%), Positives = 22/56 (39%)

Query: 6   HSSPCDKCEGPTLDRSTSSINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNVK 61
           HS        P + R  S  NV P S +P    TV  L  +LD         KN+K
Sbjct: 517 HSEGAGGGHAPDIIRVCSEPNVLPSSTNPTRPYTVNTLDEHLDMLMVCHHLDKNLK 572


>SB_6423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 3  RQRHSSPCDKCEGPTLDRSTSSINVYPES 31
          R+RH S    C GPT  RS  ++  +P+S
Sbjct: 9  RRRHES---YCVGPTRSRSVQNLQCWPDS 34


>SB_21360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 3  RQRHSSPCDKCEGPTLDRSTSSINVYPES 31
          R+RH S    C GPT  RS  ++  +P+S
Sbjct: 10 RRRHES---YCVGPTRSRSVQNLQCWPDS 35


>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 10 CDKCEGPTLDRSTSSINVYPESVDPV 35
          CD+  GPTL+   S  +V P++  PV
Sbjct: 72 CDRYIGPTLEYLASKTSVPPQTGAPV 97


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 47  LDKNYNPERYKKNVKLNFLSVNGNEMRCPYKS 78
           L+ N+ PE+YK +  L  L+ +G+    P K+
Sbjct: 261 LEPNFRPEKYKVDTILFSLTNHGDTSSYPIKT 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,910
Number of Sequences: 59808
Number of extensions: 98209
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)