Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
(81 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 32 0.042
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 26 3.6
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 26 3.6
AF016446-13|AAC24172.1| 349|Caenorhabditis elegans Seven tm rec... 26 3.6
AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine r... 25 4.8
AC024844-5|AAK29953.1| 156|Caenorhabditis elegans Hypothetical ... 25 4.8
Z66513-14|CAA91337.3| 487|Caenorhabditis elegans Hypothetical p... 25 6.3
AL132948-36|CAD31831.2| 191|Caenorhabditis elegans Hypothetical... 25 6.3
AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical ... 25 6.3
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 25 8.4
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 25 8.4
U41104-2|AAK18974.3| 304|Caenorhabditis elegans Nuclear hormone... 25 8.4
U41104-1|AAR30202.1| 318|Caenorhabditis elegans Nuclear hormone... 25 8.4
AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear recep... 25 8.4
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 25 8.4
AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine re... 25 8.4
AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine r... 25 8.4
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 32.3 bits (70), Expect = 0.042
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 49 KNYNPERYKKNVKLNFLSVNGNEM 72
KNY+PE + NV+L+ LSV+G+++
Sbjct: 2804 KNYHPEESRSNVQLHVLSVDGSDL 2827
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 24 SINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNVKLNFLSVNGN 70
++ P SVD +E + N + +++K +L++L V+GN
Sbjct: 146 NLQTIPPSVDSLENLETVVFSNNKLDSLGVDQFKNKKQLSYLDVSGN 192
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 24 SINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNVKLNFLSVNGN 70
++ P SVD +E + N + +++K +L++L V+GN
Sbjct: 146 NLQTIPPSVDSLENLETVVFSNNKLDSLGVDQFKNKKQLSYLDVSGN 192
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 34 PVEAVTVYCLLFNLDKNYNPERY 56
PV+ T+YC+LF K N ++
Sbjct: 20 PVQLFTIYCILFETPKAMNSVKW 42
>AF016446-13|AAC24172.1| 349|Caenorhabditis elegans Seven tm
receptor protein 211 protein.
Length = 349
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 24 SINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNVKLNF 64
+I ++P ++DP+ + ++C NY RYKK K F
Sbjct: 292 TIALFP-TLDPLPTMLIFCHYRKAITNYIRTRYKKVRKTKF 331
>AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine
receptor, class v protein13 protein.
Length = 350
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 7/31 (22%)
Query: 38 VTVYCLLFNLDKNYNPERYKKNVKLNFLSVN 68
+T YC LF + +K+N KLN LS+N
Sbjct: 197 ITAYCFLFII-------LHKRNAKLNSLSIN 220
>AC024844-5|AAK29953.1| 156|Caenorhabditis elegans Hypothetical
protein Y65B4A.7 protein.
Length = 156
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2 NRQRHSSPCDKCEGPTLDRSTSSINVY 28
+R S C C+ PT +R S+ NV+
Sbjct: 82 HRAAKSPKCHACKLPTFERCVSAFNVH 108
>Z66513-14|CAA91337.3| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 20 RSTSSINVYPESVDPVEAVTVYC 42
+ S+ +YP+S + V A+ YC
Sbjct: 64 KGPGSVVLYPKSTEEVSAILAYC 86
>AL132948-36|CAD31831.2| 191|Caenorhabditis elegans Hypothetical
protein Y39B6A.40 protein.
Length = 191
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 54 ERYKKNVKLNFLSVNGNEMRCPYKSRT 80
E YKK LNFL + CPY T
Sbjct: 113 EHYKKKEYLNFLYPGVHYCTCPYFQST 139
>AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 20 RSTSSINVYPESVDPVEAVTVYC 42
+ S+ +YP+S + V A+ YC
Sbjct: 64 KGPGSVVLYPKSTEEVSAILAYC 86
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 11 DKCEGPTLDRSTSSINVYPESVDP 34
D+ G + RST+S + Y + VDP
Sbjct: 466 DRDRGRSASRSTNSYHYYTQPVDP 489
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 11 DKCEGPTLDRSTSSINVYPESVDP 34
D+ G + RST+S + Y + VDP
Sbjct: 466 DRDRGRSASRSTNSYHYYTQPVDP 489
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 43 LLFNLDKNYNPERYKKNVKLNFLS 66
L N DKN+ P + K NVK N S
Sbjct: 1197 LAANEDKNHPPIKLKLNVKFNMPS 1220
>U41104-2|AAK18974.3| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 109, isoform a protein.
Length = 304
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 23 SSINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNV 60
S IN P+SV + YC + NL++ YN ++K +
Sbjct: 139 SHINNMPDSV--IFPSGDYCDMKNLERYYNSTNFEKKI 174
>U41104-1|AAR30202.1| 318|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 109, isoform b protein.
Length = 318
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 23 SSINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNV 60
S IN P+SV + YC + NL++ YN ++K +
Sbjct: 153 SHINNMPDSV--IFPSGDYCDMKNLERYYNSTNFEKKI 188
>AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear receptor
NHR-109 protein.
Length = 364
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 23 SSINVYPESVDPVEAVTVYCLLFNLDKNYNPERYKKNV 60
S IN P+SV + YC + NL++ YN ++K +
Sbjct: 199 SHINNMPDSV--IFPSGDYCDMKNLERYYNSTNFEKKI 234
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 11 DKCEGPTLDRSTSSINVYPESVDP 34
D+ G + RST+S + Y + VDP
Sbjct: 466 DRDRGRSASRSTNSYHYYTQPVDP 489
>AF125952-5|AAD14697.2| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 61 protein.
Length = 327
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 34 PVEAVTVYCLLFNLDKNYNPERYK 57
P+ VY NL NYN E YK
Sbjct: 151 PINHADVYMETLNLHPNYNFEPYK 174
>AC006722-11|AAW88389.1| 327|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 75 protein.
Length = 327
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 34 PVEAVTVYCLLFNLDKNYNPERYK 57
P+ VY NL NYN E YK
Sbjct: 151 PINHADVYMETLNLHPNYNFEPYK 174
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.131 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,853
Number of Sequences: 27539
Number of extensions: 75363
Number of successful extensions: 243
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 19
length of query: 81
length of database: 12,573,161
effective HSP length: 61
effective length of query: 20
effective length of database: 10,893,282
effective search space: 217865640
effective search space used: 217865640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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