GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
         (81 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   3.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   3.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   5.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   5.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   5.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 48  DKNYNPERYKKNVKLNFLSV 67
           + NYN   Y K +  N +++
Sbjct: 100 NNNYNNNNYNKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 48  DKNYNPERYKKNVKLNFLSV 67
           + NYN   Y K +  N +++
Sbjct: 100 NNNYNNNNYNKKLYYNIINI 119


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 12  KCEGPTLDRSTSSINVY 28
           +CE P  DR+   I+++
Sbjct: 415 RCENPDNDRTPFKISIH 431


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 12  KCEGPTLDRSTSSINVY 28
           +CE P  DR+   I+++
Sbjct: 415 RCENPDNDRTPFKISIH 431


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 12  KCEGPTLDRSTSSINVY 28
           +CE P  DR+   I+++
Sbjct: 415 RCENPDNDRTPFKISIH 431


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,224
Number of Sequences: 429
Number of extensions: 1112
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 140,377
effective HSP length: 47
effective length of query: 34
effective length of database: 120,214
effective search space:  4087276
effective search space used:  4087276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)