Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002181-TA|BGIBMGA002181-PA|undefined
(81 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 26 2.7
At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearl... 25 4.8
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 25 4.8
At1g73070.1 68414.m08449 leucine-rich repeat family protein cont... 25 4.8
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr... 25 6.3
At1g11170.2 68414.m01279 expressed protein contains Pfam profile... 25 6.3
At1g11170.1 68414.m01280 expressed protein contains Pfam profile... 25 6.3
At2g46570.1 68415.m05809 laccase family protein / diphenol oxida... 25 8.3
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 17 TLDRSTSSINVYPESVDPVEAVTVYCLLFNLDKNYN-----PERYKKNVKLNFLSV 67
++D ++ Y ES+ P E + C++ NL + Y PER K + F SV
Sbjct: 685 SVDAMVQMLSRYKESLVPREKLIFECMIANLFEEYRFFPKYPERQLKIASILFGSV 740
>At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearly
identical to acyl-activating enzyme 17 [Arabidopsis
thaliana] GI:29893266; similar to acetyl-CoA synthetase
[SP|P27095] from Methanothrix soehngenii; contains Pfam
AMP-binding enzyme domain PF00501; identical to cDNA
acyl-activating enzyme 17 (At5g23050) GI:29893265
Length = 721
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 1 MNRQRHSSPCDKCEGPTLDRS-TSSINVYPESVDPVEAVTVYCLLFNLDKNYNP 53
M R + + C G + S S + P+S+ + C LF LD++ NP
Sbjct: 485 MGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFILDEDSNP 538
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase
2A, regulatory subunit B' (PP2A, subunit B', PR53
isoform) (Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 7 SSPCDKCEGPTLDRSTSSINVYPESVDPVEAVTVYCLLFNLDKN 50
S C C GPT+ + + +PE P + NL N
Sbjct: 29 SGCCTNCGGPTISEAPPPLASFPEMSPPPNYRPIRAPAINLPHN 72
>At1g73070.1 68414.m08449 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to receptor-like
protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 598
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 29 PESVDPVEAVTVYCLLFNLDKNYNPERYKKNVKLNFLSVNGNEMRCP 75
P SV + ++ + L N + P ++ KN L+FL +N N P
Sbjct: 474 PASVSQCKTLSRFILRENNLSGFLP-KFSKNQDLSFLDLNSNSFEGP 519
>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 834
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 3 RQRHSSPCDKCEGPTLDRSTSSINVYPESV 32
+ SS C+ G L RS +S+N+Y ESV
Sbjct: 157 KSESSSACEAAAG--LIRSIASVNLYRESV 184
>At1g11170.2 68414.m01279 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 335
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 36 EAVTVYCLLFNLDK-----NYNPERYKKNVK 61
+ V++Y +F D+ N+NPERY K VK
Sbjct: 188 DVVSIYDYIFLWDEDLGVENFNPERYLKIVK 218
>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 438
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 36 EAVTVYCLLFNLDK-----NYNPERYKKNVK 61
+ V++Y +F D+ N+NPERY K VK
Sbjct: 188 DVVSIYDYIFLWDEDLGVENFNPERYLKIVK 218
>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase
family protein similar to laccase [Populus balsamifera
subsp. trichocarpa][GI:3805960]
Length = 569
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MNRQRHSSPCDKCEGPTLDRSTSSIN 26
+N+ +P +KC+GP R +S+N
Sbjct: 366 VNKCNSENPNNKCQGPRKGRLAASMN 391
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,531
Number of Sequences: 28952
Number of extensions: 65935
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 8
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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