GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   1.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   3.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    18   9.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    18   9.1  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.2 bits (40), Expect = 1.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 39  LVRTRTVFSLCTV 51
           L+ T+T+F+LC V
Sbjct: 885 LLVTQTIFALCVV 897



 Score = 17.8 bits (34), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 36  YLRLVRTRTVFSLCT 50
           Y RL +T+T  +L T
Sbjct: 397 YFRLSKTKTFCTLVT 411



 Score = 17.8 bits (34), Expect = 9.1
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 39  LVRTRTVFSLCTV 51
           L+ T+T+F +C +
Sbjct: 609 LLITQTIFIICVI 621


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 3   GKGYNSLTYNVNRSEADWRLEHTEMSKPG 31
           G G    +    +S+AD   +   +SKPG
Sbjct: 202 GDGILDFSKRGQKSDADSDSDVVNLSKPG 230


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 18  ADWRLEHTEMSKPGRLS 34
           +DW  E      PGRL+
Sbjct: 286 SDWMHEDATERFPGRLA 302


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 18  ADWRLEHTEMSKPGRLS 34
           +DW  E      PGRL+
Sbjct: 286 SDWMHEDATERFPGRLA 302


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334
Number of Sequences: 317
Number of extensions: 291
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 57
length of database: 114,650
effective HSP length: 37
effective length of query: 20
effective length of database: 102,921
effective search space:  2058420
effective search space used:  2058420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)