GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   3.7  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    23   4.8  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   4.8  
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    23   6.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    22   8.4  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
          Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 3  GKGYNSLTYNVNRSEADWRLEHTEMSKPGRLSNY 36
          G G +S    +N  E +  ++ TE + PG  S Y
Sbjct: 9  GFGTSSENSKINSDEFEDSMDVTEFNNPGEESTY 42


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 22  LEHTEMSKPGRLSNYL 37
           L H  M+KPG+L N L
Sbjct: 120 LAHKVMAKPGKLKNIL 135


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/26 (30%), Positives = 19/26 (73%)

Query: 4   KGYNSLTYNVNRSEADWRLEHTEMSK 29
           KG +SL++  NRS++  +++H  +++
Sbjct: 226 KGESSLSFKRNRSKSKRKIQHLGLTE 251


>SPAC22F3.02 |atf31||transcription factor
          Atf31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 7  NSLTYNVNRSEADWRLEHTEMSKPGRLS 34
          N+  YN+ RS+ D   E+T    P  +S
Sbjct: 70 NNDPYNIRRSDFDELSEYTASKSPSIIS 97


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 6   YNSLTYNVNRSEADWRLEHTEMSKPGRLSNY 36
           YNS+  ++ +  A + + H   S+  +L NY
Sbjct: 766 YNSVISSLTKGNAKFLMSHPMESQTPKLVNY 796


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,435
Number of Sequences: 5004
Number of extensions: 6079
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 57
length of database: 2,362,478
effective HSP length: 38
effective length of query: 19
effective length of database: 2,172,326
effective search space: 41274194
effective search space used: 41274194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)