GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1316 + 36245368-36245507,36247229-36247315,36248334-362484...    29   0.48 
06_01_0448 - 3162059-3162092,3162636-3162763,3163556-3163597,316...    27   2.5  

>01_06_1316 +
          36245368-36245507,36247229-36247315,36248334-36248439,
          36249028-36249204,36249296-36249375,36249432-36249440,
          36249474-36249566,36249788-36249947
          Length = 283

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 3  GKGYNSLTYNVNRSEADWRLEHTEMSKPGRLSNYLRLVRTRTV 45
          GK   S T  V R+   W  + TEMS    L     L R RT+
Sbjct: 38 GKSRPSFTCRVQRAVVKWSYDPTEMSDEYSLPRSFALCRVRTL 80


>06_01_0448 -
           3162059-3162092,3162636-3162763,3163556-3163597,
           3163697-3163738,3163960-3164059,3164132-3164193,
           3165085-3165169,3168003-3168187
          Length = 225

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 6   YNSLTYNVNRSEADWRLEHTEMSKPGRLSNYLRLVRTRTVFSLCTVR 52
           Y S  YN+N  EA   LE TE+S       YL+L +TR  F   T R
Sbjct: 70  YRSCNYNLNSCEASAALE-TELS---NYQEYLKL-KTRVEFLQTTQR 111


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,675
Number of Sequences: 37544
Number of extensions: 35238
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 14,793,348
effective HSP length: 37
effective length of query: 20
effective length of database: 13,404,220
effective search space: 268084400
effective search space used: 268084400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)