GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   2.8  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               26   4.9  

>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1310

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 10 TYNVNRSEADWRLEHTEMSKPGRLSNYLRLVRT 42
          TYNVN  E +W   + E+    RL NY RL ++
Sbjct: 53 TYNVNILEQEW---NEEIRTAHRLGNYPRLYKS 82


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 4    KGYNSLTYNVNRSEADWRLEHTEMSKPGRLSNYLRLVRTRTVFS 47
            KGY S+  N   S  ++   H      GR++ Y R   T T FS
Sbjct: 1786 KGYGSIRANGGGSPQEFLGRHGGAGAGGRVAVYFRKNETFTYFS 1829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,634
Number of Sequences: 59808
Number of extensions: 42364
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 16,821,457
effective HSP length: 37
effective length of query: 20
effective length of database: 14,608,561
effective search space: 292171220
effective search space used: 292171220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)