GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051601-1|AAK93025.1|  501|Drosophila melanogaster GH24095p pro...    27   2.4  
AE014297-1308|AAF54645.1|  501|Drosophila melanogaster CG17230-P...    27   2.4  
AE014297-1307|AAF54644.1|  501|Drosophila melanogaster CG17230-P...    27   2.4  
AY069386-1|AAL39531.1|  100|Drosophila melanogaster LD09564p pro...    25   9.5  

>AY051601-1|AAK93025.1|  501|Drosophila melanogaster GH24095p
           protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 11  YNVNRSEADWRLEHTEMSKPGRLSNYL 37
           YN+ RSE +WR +H  + + G LS ++
Sbjct: 343 YNLQRSEENWREQH--LQRYGELSKFI 367


>AE014297-1308|AAF54645.1|  501|Drosophila melanogaster CG17230-PB,
           isoform B protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 11  YNVNRSEADWRLEHTEMSKPGRLSNYL 37
           YN+ RSE +WR +H  + + G LS ++
Sbjct: 343 YNLQRSEENWREQH--LQRYGELSKFI 367


>AE014297-1307|AAF54644.1|  501|Drosophila melanogaster CG17230-PA,
           isoform A protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 11  YNVNRSEADWRLEHTEMSKPGRLSNYL 37
           YN+ RSE +WR +H  + + G LS ++
Sbjct: 343 YNLQRSEENWREQH--LQRYGELSKFI 367


>AY069386-1|AAL39531.1|  100|Drosophila melanogaster LD09564p
          protein.
          Length = 100

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 1  MKGKGYNSLTYNVNRSEADWRLEHTEMSKPGRLSNYLRLVRTRTVFSLCTV 51
          +K KG    T    R+      +     K G  +NY++L  T    + C +
Sbjct: 44 LKRKGSKQTTRRTERNPRHNNKQRNMKHKRGACANYVKLCETPVFLAFCAI 94


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,694
Number of Sequences: 52641
Number of extensions: 60397
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 4
length of query: 57
length of database: 24,830,863
effective HSP length: 38
effective length of query: 19
effective length of database: 22,830,505
effective search space: 433779595
effective search space used: 433779595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)