GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-3|AAB52876.1|  250|Caenorhabditis elegans Hypothetical pr...    27   2.1  

>U97593-3|AAB52876.1|  250|Caenorhabditis elegans Hypothetical
           protein C46G7.2 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 11  YNVNRSEADWRLEHTEMSKPGR-LSNYL 37
           YN + S+A WR  H E++KP + L  Y+
Sbjct: 114 YNKSYSDARWRDTHREINKPYKPLDTYI 141


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,369
Number of Sequences: 27539
Number of extensions: 30569
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 1
length of query: 57
length of database: 12,573,161
effective HSP length: 38
effective length of query: 19
effective length of database: 11,526,679
effective search space: 219006901
effective search space used: 219006901
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)