GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002179-TA|BGIBMGA002179-PA|undefined
         (57 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    25   8.0  
At5g25500.1 68418.m03034 expressed protein ; expression supporte...    25   8.0  

>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 7   NSLTY-NVNRSEADWRLEHTEMSKPGRLSNYLRL 39
           NS TY N+   E D  +EH EM        Y++L
Sbjct: 309 NSGTYSNIEHLEMDLNIEHLEMDSNSDTYVYIKL 342


>At5g25500.1 68418.m03034 expressed protein ; expression supported
           by MPSS
          Length = 420

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 15  RSEADWRLEHTEMSKPGRL 33
           + E DW +EH EMS+ GR+
Sbjct: 179 KEEVDWLVEHREMSQ-GRV 196


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,790
Number of Sequences: 28952
Number of extensions: 30351
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 12,070,560
effective HSP length: 38
effective length of query: 19
effective length of database: 10,970,384
effective search space: 208437296
effective search space used: 208437296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)