Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002177-TA|BGIBMGA002177-PA|undefined
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   1.8  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   3.2  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    25   3.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 20  RPLGSDEVGAVVDAKDSPGSLTESVGYGTKFG 51
           RP GS   G+VV    S GS   S G GT  G
Sbjct: 775 RPTGSSSQGSVVPT-TSTGSSVTSTGTGTTTG 805


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 20  RPLGSDEVGAVV--DAKDSPGSLTESVGYGTKFGKSGL 55
           R +  + V  V+  D  DSP S    VG   +FG  GL
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGL 394


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 43 SVGYGTKFGKSGLDDHGFGNLGDDKVVQN 71
          S  +GTKFGK      GF NL   ++  N
Sbjct: 62 SDAFGTKFGKDARKVPGFDNLSAMEIDPN 90


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,043
Number of Sequences: 5004
Number of extensions: 10896
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)