GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002177-TA|BGIBMGA002177-PA|undefined
         (104 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5LM90 Cluster: Type I secretion target repeat protein;...    33   1.5  
UniRef50_A3Q9N7 Cluster: Putative outer membrane adhesin like pr...    31   5.9  

>UniRef50_Q5LM90 Cluster: Type I secretion target repeat protein; n=1;
            Silicibacter pomeroyi|Rep: Type I secretion target repeat
            protein - Silicibacter pomeroyi
          Length = 2164

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 23   GSDEVGA---VVDAKDSPGSLTESVGYGTKFGKSGLDDHGFGNLGDD 66
            G+D + A    +D  D   SLT       + G+ GL DH FG  GDD
Sbjct: 1800 GNDGITADADTLDGGDGNDSLTSGQTLAPEAGREGLGDHLFGQAGDD 1846


>UniRef50_A3Q9N7 Cluster: Putative outer membrane adhesin like
            proteiin; n=1; Shewanella loihica PV-4|Rep: Putative
            outer membrane adhesin like proteiin - Shewanella loihica
            (strain BAA-1088 / PV-4)
          Length = 4836

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 23   GSDEVGAVVDAKDSPGSLTESVGYGTKFGKSGLDDHG--FGNLGDDKV 68
            G + V  +VD  ++ G+ T+S   G  F     D  G  FGN+GD  V
Sbjct: 3446 GGNNVDLIVDDANTQGTATDSDSAGLSFTAGAYDVTGFAFGNIGDINV 3493


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.312    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,141,984
Number of Sequences: 1657284
Number of extensions: 2980721
Number of successful extensions: 3630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3628
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 575,637,011
effective HSP length: 81
effective length of query: 23
effective length of database: 441,397,007
effective search space: 10152131161
effective search space used: 10152131161
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)