GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002177-TA|BGIBMGA002177-PA|undefined
         (104 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    28   1.4  
U28991-13|AAA68387.1|  281|Caenorhabditis elegans Hypothetical p...    28   1.4  
AL132876-27|CAE17987.1|  405|Caenorhabditis elegans Hypothetical...    26   4.4  

>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 45  GYGTKFGKSGLDDHGF 60
           G+G  FG+ G+D HGF
Sbjct: 148 GFGRPFGRRGMDHHGF 163


>U28991-13|AAA68387.1|  281|Caenorhabditis elegans Hypothetical
           protein F08F8.5 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 45  GYGTKFGKSGLDDHGF 60
           G+G  FG+ G+D HGF
Sbjct: 222 GFGRPFGRRGMDHHGF 237


>AL132876-27|CAE17987.1|  405|Caenorhabditis elegans Hypothetical
           protein Y105E8A.29 protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 33  AKDSPG-SLTESVGYGTKFGKSGLDDHGFGNL 63
           A  SP  S++ S+G   K  KSG D   FGNL
Sbjct: 269 AAQSPSPSMSLSIGKNAKKEKSGSDTFTFGNL 300


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,481
Number of Sequences: 27539
Number of extensions: 63382
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 12,573,161
effective HSP length: 71
effective length of query: 33
effective length of database: 10,617,892
effective search space: 350390436
effective search space used: 350390436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)