GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002177-TA|BGIBMGA002177-PA|undefined
         (104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19370.1 68414.m02410 expressed protein                             26   5.5  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    25   9.6  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    25   9.6  

>At1g19370.1 68414.m02410 expressed protein
          Length = 605

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 5/26 (19%)

Query: 51  GKSGLDDHGFGN-----LGDDKVVQN 71
           G SGLD +GFGN      G++KV+ N
Sbjct: 578 GGSGLDSNGFGNRRDHLFGNNKVLDN 603


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
          RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 26 EVGAVVD---AKDSPGSLTESVGYGTKFGKSGLDDHG 59
          E GA  D      SP SL+   G G K G+ G+   G
Sbjct: 63 EGGAAADHHSEASSPSSLSAGAGNGAKVGRGGVGGSG 99


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 22  LGSDEVGAVVDAKDSPGSLTESVGYGTKFGKSGLDDHGFGNLGD 65
           L +DE   +V+A     +L E   YG   G  G+D H   N  D
Sbjct: 332 LQTDEASEMVEANSVVDTLDEKPSYGEGIG--GVDFHSKDNEND 373


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,002
Number of Sequences: 28952
Number of extensions: 68155
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)