GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002175-TA|BGIBMGA002175-PA|IPR000583|Glutamine
amidotransferase, class-II
         (215 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488...    29   3.8  
01_01_0315 + 2560337-2560675,2560737-2560781,2561630-2561749,256...    27   8.8  

>12_01_1054 +
          10847342-10847543,10847627-10847962,10848557-10848807,
          10849226-10849313,10849548-10849723,10850597-10850656,
          10850811-10850901,10851563-10851639,10852565-10852653,
          10852950-10853061,10853623-10853725,10854892-10855121
          Length = 604

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 10 LAVLAVAQAFPHGSSDVDGSGEVEAVAGTLKKGFGFGG 47
          L V A  ++ P G+S  D   E E + G L +GF   G
Sbjct: 45 LTVAAALRSLPDGASSPDLQREAEEIRGLLVRGFDIVG 82


>01_01_0315 +
           2560337-2560675,2560737-2560781,2561630-2561749,
           2562224-2562444,2562799-2562901,2562997-2563074,
           2563176-2563267,2563377-2563439,2563527-2563749,
           2563788-2563886
          Length = 460

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 145 DSGFGSFGDSALDSFGKDNAGHVKDISSLADHGIDEDKIEK 185
           D+     G    D +G DN GH       A+ G ++D+IE+
Sbjct: 140 DNFIDDTGVDPADRYGSDNDGHSPRHYPQAEEGEEDDEIER 180


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,336
Number of Sequences: 37544
Number of extensions: 87254
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 2
length of query: 215
length of database: 14,793,348
effective HSP length: 79
effective length of query: 136
effective length of database: 11,827,372
effective search space: 1608522592
effective search space used: 1608522592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)