Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002174-TA|BGIBMGA002174-PA|undefined
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 31 1.8
08_01_0079 - 554936-554977,555108-555297,555384-555430,556039-55... 30 3.2
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 30 4.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 30 4.2
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 30 4.2
01_06_0845 - 32389889-32389909,32390074-32390241,32390334-323904... 30 4.2
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 29 7.3
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 29 7.3
08_01_0725 - 6480773-6481203,6481802-6482801 29 9.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 9.7
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 31.1 bits (67), Expect = 1.8
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 319 PSVMNKVNNYNELINILSKKIEEQNNTSMEMANVLFGGIISLEDKSNNLNHTENVSNDKA 378
PS ++K+ L ++ K +N++S + + +L I +L D+S+ N T + SND +
Sbjct: 524 PSPVSKLQERTWLWDLFETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTS 583
Query: 379 RPTCP-FSDTTARND---NVDLQRNYTVTSNDNDTDFPTTESVK 418
P SD N+ D++R ++ + FP E V+
Sbjct: 584 LYNYPSLSDWNDLNEVEIFEDIERREIEEASFSPLPFPIDERVE 627
>08_01_0079 -
554936-554977,555108-555297,555384-555430,556039-556139,
556223-556271,556432-556494,556602-556695,556822-556924,
557719-557791,557872-557984,558068-558149,558386-558913,
559015-559098,560156-560305,561021-561191,561759-561809,
562601-562738,562823-562894,563236-563391,563681-563839,
564080-564180,564577-564829
Length = 939
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 67 DVSNRDRIVSNIGSDGDRTRANMFVVEQKSNAVTELFVRDH 107
DV ++D ++S++ + +R +A + +EQ ++ VTE H
Sbjct: 607 DVPDKDTLISSLKEEVERLKARLAQLEQHNDLVTESSAESH 647
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 330 ELINILSKKIEEQNNTSMEMANVLFGGIISLEDKSNNLNHTENVSNDKARPTCPFSDTTA 389
E +NI+ E+Q+N ++ +L+ G +S N NH E V ++ A +
Sbjct: 402 EAMNIVHISKEDQDNVFTMVSAILWLGDVSFTVIDNE-NHVEIVVDEAAETVARLLGCSI 460
Query: 390 RNDNVDLQRNYTVTSNDN 407
+ N+ L + + +N+N
Sbjct: 461 EDLNLALSKRHMKVNNEN 478
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 297 SIINKTTEMNRTNIYNQNSDDKPSVMNKVNNYNELINILSKKIEEQNNTSMEMANVLFGG 356
SI+N+++ T +QN + S + K + + S K+ N TS + N LF
Sbjct: 891 SIVNQSSSSKET-CKDQNLKETKSKLTKSEEPFAMTDSKSIKVAHSNQTSRNLNNELFED 949
Query: 357 IISLEDKSNNLNHTENVSNDKA 378
KS EN S+++A
Sbjct: 950 STPFAVKSGMSEPPENRSSEQA 971
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 29.9 bits (64), Expect = 4.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 323 NKVNNYNELINILSKKIEEQNNTSMEMANVLFGGIISLEDKSNNLNH 369
++ N + I +L KK+EE+ S +A V GI +LE+K H
Sbjct: 480 SEAKNLGDKITLLEKKLEEEKAFSTRLA-VRCHGIEALEEKKKGTEH 525
>01_06_0845 -
32389889-32389909,32390074-32390241,32390334-32390453,
32390982-32391068,32391149-32391217,32391448-32391510,
32391648-32391989,32392245-32392337,32392457-32392660,
32392910-32393154,32393249-32393414
Length = 525
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 305 MNRTNIYNQNSDDKPSVMNKVNNYNELINILSKKIEEQNNTSMEMAN 351
+N T + + +SD++ V +V +L+ L ++IEE N N
Sbjct: 299 INITTVNDSSSDEETHVRGEVGELKKLVKTLGQRIEELENKGTSNGN 345
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 29.1 bits (62), Expect = 7.3
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 311 YNQNSDDKPSVMNKVNNYNELINILSKKIEEQNNTSMEMANVLFGGIISLEDKSNNLNHT 370
+N++ K + ++ +YNE++ K++ E N + N L ++ E S + T
Sbjct: 394 FNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDN----QQLNYLKNKMVKKEQHSKLVEDT 449
Query: 371 ENVSNDKARPTCPFSDTTARN 391
+V K R T +T RN
Sbjct: 450 LSVVTQKLRETME-ENTIVRN 469
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 29.1 bits (62), Expect = 7.3
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 88 NMFVVEQKSNAVTELFVRDHVPENIIAIPETDFMKELRPDPFKDKYKALLKSRKTPRVEL 147
N+ V+ + L+ RD++ N+ + DF E R F D+Y + + +++
Sbjct: 220 NLLVLRFANRLFLPLWNRDNIA-NVQIVFREDFGTEGRGGYF-DQYGIIRDIIQNHLLQV 277
Query: 148 RYNVR-DQVKNMKSDALRHENIDLLKTRWPLKKYNKVNGQFVFQNNNDNVPLKSN 201
V ++ ++K + +R E + +L++ P+K V GQ+ ++ VP SN
Sbjct: 278 FCLVAMEKPVSLKPEHIRDEKVKVLQSVTPIKHDEVVLGQYDGYKDDSTVPDDSN 332
>08_01_0725 - 6480773-6481203,6481802-6482801
Length = 476
Score = 28.7 bits (61), Expect = 9.7
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 350 ANVLFGGIISLEDKSNNLNHTENVSNDKA---RPTCPFSDTTARNDNV-----DLQRNYT 401
++V+ + ED+ N N+T N ++D +CP SD + + NV D+ +
Sbjct: 233 SSVVHQEFLPQEDERNADNNTSNTNDDDTTNNHGSCPISDHSNKACNVSSIHQDVNDSIN 292
Query: 402 V-TSNDNDTDFPT 413
V T NDN ++F T
Sbjct: 293 VGTQNDNLSNFDT 305
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 301 KTTEMNRTNIYNQNSDDKPSVMNKVNNYNELINILSKKIEEQNNTSMEMANVLFGGIISL 360
+T ++ N+Y+Q+ +D + ++ NE++N + K E +T + + + +I
Sbjct: 1177 ETALISSGNLYSQSQEDVNRLTLEIERLNEMLNDMENKSSEYKSTILLLNSEKDMSVIQY 1236
Query: 361 EDKSNNLNHTEN 372
+ S + E+
Sbjct: 1237 KQSSLRIYELES 1248
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,989
Number of Sequences: 37544
Number of extensions: 430480
Number of successful extensions: 802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 11
length of query: 436
length of database: 14,793,348
effective HSP length: 84
effective length of query: 352
effective length of database: 11,639,652
effective search space: 4097157504
effective search space used: 4097157504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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