GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002174-TA|BGIBMGA002174-PA|undefined
         (436 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    27   0.41 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.72 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.95 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   1.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   2.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   5.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   6.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 205 MTTNQENEVNRNGQSKYFKRDLGN---ISKVDLKTVYNVGTIDAAIQNTTLSIETLIEN 260
           M T  E   ++ G+    + DL N   I KV      N+G ID  I N T++I+  ++N
Sbjct: 44  MKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQN 102


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.72
 Identities = 10/57 (17%), Positives = 30/57 (52%)

Query: 293 SYYHSIINKTTEMNRTNIYNQNSDDKPSVMNKVNNYNELINILSKKIEEQNNTSMEM 349
           +Y++S  N +   N   ++ QN +++ ++  K ++Y +   +  +  E ++ T  ++
Sbjct: 141 NYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEVSMENTENKSCTDSDI 197


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 25.4 bits (53), Expect = 0.95
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 37 EFHNTQPICVCVQMCADQPTYCYPNGCFKRDVSNRDRIVSN 77
          EF++      C+Q   +   +C+ NG   RD+   + ++++
Sbjct: 4  EFYSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLAS 44


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 382 CPFSDTTARNDNVDLQRNYTVTSNDNDTDFPTTESVK 418
           C F      NDNV     + V  ND D D    +S++
Sbjct: 59  CLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIR 95


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 310 IYNQNS-DDKPSVMNKVNNYNELINILSKKIEEQNNTSMEMANV 352
           I N NS  +  +  N  NNYN   N   KK++  N  ++E   V
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPV 125


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 297 SIINKTTEMNRTNIYNQNSDDKPSVMNKVNNYNEL 331
           S+ NKT   N  N  N N ++     N  NNY +L
Sbjct: 84  SLSNKTIH-NNNNYNNNNYNNYNYNNNNYNNYKKL 117


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 303 TEMNRTNIYNQNSDDKPSVMNKVNNYN 329
           + ++   I+N N+ +  +  N  NNYN
Sbjct: 316 SSLSNKTIHNNNNYNNNNYNNNYNNYN 342


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 180 YNKVNGQFVFQNNNDNVPLKSNKFFMTTNQE 210
           YN  N      +NN+ V + +  FF+  +Q+
Sbjct: 531 YNNFNSDIKSISNNEQVKVSALGFFILISQD 561


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 308 TNIYNQNSDDKP-SVMN--KVNNYNELINILSKKIEEQNNTSME 348
           +++ N N++D+  S  N   V+++   +NI S KI+E    S+E
Sbjct: 363 SSLDNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKIDEDQKCSIE 406


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 180 YNKVNGQFVFQNNNDNVPLKSNKFFMTTNQE 210
           YN  N      +NN+ V + +  FF+  +Q+
Sbjct: 531 YNNFNSDIKSISNNEQVKVSALGFFILISQD 561


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,653
Number of Sequences: 429
Number of extensions: 6697
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 10
length of query: 436
length of database: 140,377
effective HSP length: 60
effective length of query: 376
effective length of database: 114,637
effective search space: 43103512
effective search space used: 43103512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)