Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002172-TA|BGIBMGA002172-PA|IPR002018|Carboxylesterase,
type B
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   3.7  
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    25   4.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.5  

>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 121 DQMGPVCPQRLPDISNETLAL 141
           D+ GP  P R+P +SN+ +++
Sbjct: 4   DKFGPCAPSRIPLLSNDLISM 24


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 91  LGVPYATPPTGSNRFAPTRAPAPW 114
           L +  A P T S++F  T AP PW
Sbjct: 88  LSMANAGPNTNSSQFFITLAPTPW 111


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 115 DEVKMVDQMGPVCPQRLPDISNETLALERMPK 146
           +  K++ Q+G +C Q+    +N+ LA++ + K
Sbjct: 544 NHAKVLQQLGWLCHQQSSSFTNQDLAIQYLTK 575


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,733
Number of Sequences: 5004
Number of extensions: 25972
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 3
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)