GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002172-TA|BGIBMGA002172-PA|IPR002018|Carboxylesterase,
type B
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742...    29   2.8  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    29   2.8  

>04_03_0781 +
           19572795-19573540,19573906-19573956,19574179-19574251,
           19574772-19574876
          Length = 324

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 83  YLKPVEAYLGVPYATPPTGSNRFAPTRAPAPWDEV 117
           +L+P  A  G+P A+ PT   R AP   P PW  V
Sbjct: 157 FLRPGPAMPGIPQASIPTHMLRAAPPWLP-PWSPV 190


>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 82  KYLKPVEAYLGVPYATPPTGSNRFAPTRAPAPW 114
           KY++P  A LG P    PT + +F P   P P+
Sbjct: 250 KYVRP-GATLGAPLGGAPTATGQFRPPGPPGPF 281


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,472,292
Number of Sequences: 37544
Number of extensions: 174496
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 2
length of query: 178
length of database: 14,793,348
effective HSP length: 78
effective length of query: 100
effective length of database: 11,864,916
effective search space: 1186491600
effective search space used: 1186491600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)