GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002172-TA|BGIBMGA002172-PA|IPR002018|Carboxylesterase,
type B
         (178 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    30   1.0  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    27   7.1  
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea...    27   7.1  
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si...    27   9.4  
At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 77  PMDQHKYLKPVEAYLGVPYATPPTGSNRFAPTRAPAPW 114
           P  QH Y  P + +    Y++ P  S+  AP   PAP+
Sbjct: 140 PTSQHMYYSPYDQHQTSGYSSAPPPSSAPAPNPNPAPY 177


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 70  KLQGVILPMDQHKYLKPVEAYLGVPYATP--PTG-----SNRFAPTRAPAPWDEVKMVDQ 122
           K Q +  P  QH  L P +  +G  +A P  P G     +N   P + PA         +
Sbjct: 363 KKQKLQHPQQQHSRLPPQQHGVGQSHAAPLWPAGPNHPMNNNAPPPQIPAGGHYYGGKPR 422

Query: 123 MGPVCPQRLPDISNETLALERMPKG 147
            G   P R P   N+T       +G
Sbjct: 423 GGAPVPNRYPPSGNQTGGYNNQSRG 447


>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 544

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 93  VPYATPPTGSNRFAPTRAPAPWDEVKMVDQMGPV-CPQRLPDIS 135
           VP   PP GS  ++     A WD +  +  + P  C + +P +S
Sbjct: 436 VPLRRPPGGSPTYSTGSQSAHWDNIVPMGTLQPAPCMRDVPKLS 479


>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
           similar to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 440

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 115 DEVKMVDQMGPVCPQRLPDIS 135
           DE+ M+ Q+   CP+ +PD+S
Sbjct: 196 DEINMLRQIAVDCPRTVPDVS 216


>At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 606

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 22  RITKQLSIQDKVNXXXXXXXXXTQNSMCNGFNSRNSMLRTRVIGTRYGKLQGVILPMDQH 81
           +I++ +S++DK+          T N++ NGF  +N ML+  +    +G ++G        
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGF-CKNDMLKEAL--DMFGSVKGQGAVPTTR 402

Query: 82  KYLKPVEAY 90
            Y   ++AY
Sbjct: 403 MYNMLIDAY 411


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,634,842
Number of Sequences: 28952
Number of extensions: 135764
Number of successful extensions: 228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 5
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)