GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002169-TA|BGIBMGA002169-PA|IPR002018|Carboxylesterase,
type B
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0503 - 16611860-16611961,16612506-16612615,16612879-16612954     28   3.9  
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    27   6.8  
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875...    27   6.8  
11_06_0610 - 25449085-25453284                                         27   9.0  
03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627...    27   9.0  

>04_03_0503 -
          16611860-16611961,16612506-16612615,16612879-16612954
          Length = 95

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 48 GRRLTREYHLRQGALRG--LIVKPNRQYDLQLVEMFL 82
          G+ +  E+HLR G LRG   ++ P+ + +L    +F+
Sbjct: 36 GKEILGEWHLRSGILRGWQKVISPHSEVELVFFFLFM 72


>09_06_0317 -
           22265786-22267618,22267874-22268446,22268546-22268677,
           22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 101 SAPPWQGVRMATHFAPVCPQSLPLIKKGNPPSL 133
           +AP  +  R+A H AP  P+S P    GN P++
Sbjct: 11  AAPDPKKPRLAQHPAPRDPRSYPAAANGNAPAV 43


>08_01_0889 +
           8753877-8754236,8754995-8755054,8755174-8755250,
           8755481-8755622,8755736-8755772,8755852-8755921,
           8756021-8756212,8756321-8756413,8756545-8756773,
           8756861-8756944,8757041-8757192,8757279-8757375,
           8757576-8757725,8757813-8757890,8757982-8758104,
           8758169-8758315,8758418-8758472,8758807-8758874
          Length = 737

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 77  LVEMFLGIPYAAPPTGNF-RFMPPVSAPPWQGVRMATHFAPV-CPQSLPLIKKGNPPSLG 134
           L+E+    P A PP G F   + P   P +  +  +   AP     +  L+ +  P    
Sbjct: 462 LLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPSMAPTRIHVTCALVHEKTPAGRV 521

Query: 135 RQRYLNK-LKPFL-SNESEDCLYLNIYVPYRDFKL---ERLPLCRHWPDDGTCP 183
            +   +  +K  + S E++DC +  ++V   +FKL     +P+    P  G  P
Sbjct: 522 HKGVCSTWIKNAIPSEETKDCSWAPVFVRQSNFKLPADPSVPVIMIGPGTGLAP 575


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 85  PYAAPPTGNFRFMPPVSAPPWQGVRMATHFAPVCPQSLPLIKKGNPPS 132
           P A PPT       P S+PP +G    T   P    S P + +G+ PS
Sbjct: 531 PQAEPPTEYSPPATPESSPPPEGKSPPT---PTASHSPPPVPEGHTPS 575


>03_05_1032 -
           29861859-29862011,29862347-29862470,29862557-29862759,
           29863081-29863199,29863489-29863623,29863695-29863950,
           29864749-29864880,29865001-29865222
          Length = 447

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 162 YRDFKLERLPLCRHWPDDGTC 182
           +R FK++    C  WPDDG C
Sbjct: 114 FRYFKVKLWCDCPFWPDDGMC 134


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.143    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,485,542
Number of Sequences: 37544
Number of extensions: 298811
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 6
length of query: 183
length of database: 14,793,348
effective HSP length: 78
effective length of query: 105
effective length of database: 11,864,916
effective search space: 1245816180
effective search space used: 1245816180
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)