GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002169-TA|BGIBMGA002169-PA|IPR002018|Carboxylesterase,
type B
         (183 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    30   1.1  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    29   2.5  
At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1 (...    29   2.5  
At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1 (...    29   2.5  
At2g43200.1 68415.m05369 dehydration-responsive family protein s...    28   3.2  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    27   5.7  
At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor...    27   9.9  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    27   9.9  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 89  PPTGNFRFMPPVSAPPWQGVRMATHFAPVCPQSLPLIKKGNPP 131
           PPT      PP + PP Q         PV P + P +K   PP
Sbjct: 166 PPTTTPPVKPPTTTPPVQPPTYNPPTTPVKPPTAPPVKPPTPP 208


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 85  PYAAPPT-GNFRFMPPVSAPPWQGVRMATHFAPVCPQSLPLIKKGNP 130
           PY  PP  G F    P+S+PP   +   T+F P  P   P +  G P
Sbjct: 251 PYGQPPNAGPFTGNSPLSSPPAHSIPPPTNF-PGVPYGRPPMPGGFP 296


>At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 478

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 162 YRDFKLERLPLCRHWPDDGTC 182
           YR FK++    C  WPDDG C
Sbjct: 100 YRYFKVKLWCDCPFWPDDGMC 120


>At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 472

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 162 YRDFKLERLPLCRHWPDDGTC 182
           YR FK++    C  WPDDG C
Sbjct: 100 YRYFKVKLWCDCPFWPDDGMC 120


>At2g43200.1 68415.m05369 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 611

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 66  IVKPNRQYDLQLVEMFLGIPYAAPPTGNFRFMPP---VSAPPWQGVRMATHFAPVCPQSL 122
           I   +R +  QL    +   Y+ P T   R  PP   +  PP     ++++F P+CP++ 
Sbjct: 40  ISSQDRHHPPQLHVPSISHYYSLPETSENRSSPPPLLLPPPPSSSSSLSSYF-PLCPKNF 98

Query: 123 PLIKKGNPPSLGRQ 136
                 + PS  RQ
Sbjct: 99  TNYLPCHDPSTARQ 112


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 137 RYLNKLKPFLSN---ESEDCLYLNIYVPYRDFKLERL 170
           +Y+NK    L N   +  D   L  ++PYRD KL R+
Sbjct: 249 KYINKSLMILGNVINKLSDSTKLRAHIPYRDSKLTRI 285


>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
           floral organs protein (AFO) / filamentous flower protein
           (FIL) identical to YABBY1 [Arabidopsis thaliana]
           GI:4928749, abnormal floral organs protein (AFO)
           [Arabidopsis thaliana] GI:4322477; supporting cDNA
           gi|4322476|gb|AF087015.1|AF087015
          Length = 229

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 98  PPVSAPPWQGVRMATHFAPVCPQSLPLIKKGNPPSLGRQRY 138
           PPV+ PP +  R+ + +     + +  IK GNP    R+ +
Sbjct: 132 PPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAF 172


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 85  PYAAPPTGNFRFMPPVSAPPWQGVRMATHFAPVCPQSLPLIKKGNPPS 132
           P   PPT  +   PP+  PP Q     T+  P+ P   P I+K   PS
Sbjct: 103 PIQKPPTPTYS--PPIYPPPIQKPPTPTYSPPIYP---PPIQKPPTPS 145


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.143    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,974,341
Number of Sequences: 28952
Number of extensions: 226934
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 22
length of query: 183
length of database: 12,070,560
effective HSP length: 77
effective length of query: 106
effective length of database: 9,841,256
effective search space: 1043173136
effective search space used: 1043173136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)