GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002168-TA|BGIBMGA002168-PA|IPR007087|Zinc finger,
C2H2-type, IPR000209|Peptidase S8 and S53, subtilisin, kexin,
sedolisin
         (460 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    66   4e-13
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    56   6e-10
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    46   5e-07
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    40   3e-05
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    28   0.19 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.44 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.76 
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    23   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   7.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 66.5 bits (155), Expect = 4e-13
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 377 NIHGTSLAFPSATAAELSGLLGKEKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDV 436
           NI G + A P+          G EKP ++C  C++ F  K N+ VH R HT E+P++CDV
Sbjct: 95  NICGKTFAVPARLTRHYRTHTG-EKP-YQCEYCSKSFSVKENLSVHRRIHTKERPYKCDV 152

Query: 437 CAKAFRQKAHLIKHQQIH 454
           C +AF     L +H +IH
Sbjct: 153 CERAFEHSGKLHRHMRIH 170



 Score = 62.9 bits (146), Expect = 5e-12
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 398 GKE-KPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIHKR 456
           GKE +  +RC IC + F   + +  H RTHTGEKP++C+ C+K+F  K +L  H++IH +
Sbjct: 85  GKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTK 144



 Score = 62.1 bits (144), Expect = 9e-12
 Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 400 EKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           EKP + C  C +GF     +KVH RTHTGEKP+ CD+C K+F     L  HQ  H
Sbjct: 201 EKP-YVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAH 254



 Score = 61.3 bits (142), Expect = 2e-11
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 399 KEKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           KE+P ++C +C R F +   +  H+R HTGE+P +C VC+K F Q   L+ H + H
Sbjct: 144 KERP-YKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTH 198



 Score = 59.3 bits (137), Expect = 7e-11
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 400 EKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           E+P H+C +C++ F+    + +H+RTHTGEKP+ C  C K F     L  H + H
Sbjct: 173 ERP-HKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTH 226



 Score = 53.6 bits (123), Expect = 3e-09
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 385 FPSATAAELSGLLGKEKPVHRCGICNRGFLNKSNIKVHLRTH--TGEKPFRCDVCAKAFR 442
           F S      + L   E+  ++C +C + F  K+  + HLR+H   GE P+RC++C K F 
Sbjct: 43  FTSPACGSETPLTNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFA 102

Query: 443 QKAHLIKHQQIH 454
             A L +H + H
Sbjct: 103 VPARLTRHYRTH 114



 Score = 42.3 bits (95), Expect = 8e-06
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 400 EKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           EKP + C IC + F     +K+H   H GEK ++C +C + F  K  +  H + H
Sbjct: 229 EKP-YTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTH 282



 Score = 30.7 bits (66), Expect = 0.027
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 425 THTGEKPFRCDVCAKAFRQKAHLIKHQQIHKRIGRD 460
           T+  EK ++C +C KAF QK     H + H + G D
Sbjct: 55  TNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGED 90



 Score = 29.1 bits (62), Expect = 0.082
 Identities = 8/25 (32%), Positives = 19/25 (76%)

Query: 403 VHRCGICNRGFLNKSNIKVHLRTHT 427
           V++C +C+  F +K  +++H++TH+
Sbjct: 259 VYKCTLCHETFGSKKTMELHIKTHS 283


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 56.0 bits (129), Expect = 6e-10
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 400 EKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           EKP   C  C++ F    ++K H+R HTGEKP+ C  C + F Q A+L +H ++H
Sbjct: 7   EKPFE-CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVH 60



 Score = 53.2 bits (122), Expect = 4e-09
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 400 EKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCA 438
           EKP H C  C+R F+  +N++ HLR HTGE+P+ C++CA
Sbjct: 35  EKPYH-CSHCDRQFVQVANLRRHLRVHTGERPYACELCA 72



 Score = 44.0 bits (99), Expect = 3e-06
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 424 RTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           RTHTGEKPF C  C K F +  HL  H ++H
Sbjct: 2   RTHTGEKPFECPECHKRFTRDHHLKTHMRLH 32


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 46.4 bits (105), Expect = 5e-07
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 405 RCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAF 441
           +C +C + F     ++ H+RTHTGEKPF C  C +AF
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAF 80



 Score = 41.1 bits (92), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 398 GKEKPVHRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIH 454
           G+ K    C  C + +++   +K+H+RTHT   P +C +C KAF +   L  H + H
Sbjct: 11  GQAKKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTH 65


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 416 KSNIKVHLRTHTGEKPFRCDVCAKAFRQKAHLIKHQQIHKRI 457
           K +++ HLR H G KPF+C+ C+ +   K+ L  H + H  +
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNV 42



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 405 RCGICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQ----KAHLIKH 450
           +C  C+   +NKS +  HL++H+    +RC  C  A +     K HL K+
Sbjct: 18  KCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKY 67


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 404 HRCGICNRGFLNKSNIKVHLRTHTGEKPFRCDV 436
           +RC IC R + +++++  H+ T+   +P   D+
Sbjct: 36  YRCVICERVYCSRNSLMTHIYTYHKSRPGDIDI 68



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 427 TGEKPFRCDVCAKAFRQKAHLIKH 450
           + +K F C +C K    KA L +H
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRH 24


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 404 HRCGICNRGFLNKSNIKVHLRTHTGEKPFR---CDVCAKAFRQKAHLIKHQQIHKR 456
           + C +C +    K  +K H +     +P     C +C K FR    L  H+ I+ R
Sbjct: 372 YTCDVCGKTLSTKLTLKRH-KEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHR 426


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 286 PPVKQEAPSSTSYGMDVISTSSPPGNA-VSTTDG 318
           PP + E  +S+   +D  +T SPP N   ST DG
Sbjct: 36  PPSRVEFSNSSGAWLDCTATGSPPLNIDWSTADG 69


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 286 PPVKQEAPSSTSYGMDVISTSSPPGNA-VSTTDG 318
           PP + E  +S+   +D  +T SPP N   ST DG
Sbjct: 36  PPSRVEFSNSSGAWLDCTATGSPPLNIDWSTADG 69


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 401 KPVHRCGICNRGFLNKSNIKVHLRTHTGEKP 431
           KP        RG +N  ++ +  RT  G KP
Sbjct: 139 KPTTTSDELKRGIINPEDVMLKRRTGEGSKP 169


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 86  NNYPTQSGYGTDHDVVSSSTCVADAEPPDLEDVKPFLEPQDTKPFSESSGPGAPDSCAAS 145
           N+  T SG    H    S T     +PP     +    P D+   S +  P  P S +AS
Sbjct: 543 NSGSTSSGDDELHRASLSKT----PQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSAS 598

Query: 146 CSP 148
            +P
Sbjct: 599 SAP 601


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,806
Number of Sequences: 429
Number of extensions: 5427
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 24
length of query: 460
length of database: 140,377
effective HSP length: 60
effective length of query: 400
effective length of database: 114,637
effective search space: 45854800
effective search space used: 45854800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)