GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002167-TA|BGIBMGA002167-PA|IPR006020|Phosphotyrosine
interaction region
         (448 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   7.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 404 DSLTSSTETEVFKSVGDSDSACSDESGYSEFL-DGKESIIGNT 445
           D L S+ E +VFK  GD +    DE   SE L + K S+I  T
Sbjct: 10  DDLGSTDEVKVFKDEGDGE----DEKRSSENLTEEKSSLIDLT 48


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 95  HELRCHAVLCTKESISKKITEELQVKLKQALVEFKKERISKQNA 138
           H ++    L +KE +SKKI +  +V        ++K R+ ++ +
Sbjct: 169 HGIQPSPTLPSKEEVSKKIDDNQKVGYVVEGRNYRKYRVEERTS 212


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,184
Number of Sequences: 317
Number of extensions: 3481
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 448
length of database: 114,650
effective HSP length: 59
effective length of query: 389
effective length of database: 95,947
effective search space: 37323383
effective search space used: 37323383
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)