GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002167-TA|BGIBMGA002167-PA|IPR006020|Phosphotyrosine
interaction region
         (448 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical pr...   197   1e-50
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    35   0.13 
AC024876-11|AAF60895.1|  365|Caenorhabditis elegans Hypothetical...    31   1.6  
Z70213-3|CAA94172.1|  194|Caenorhabditis elegans Hypothetical pr...    30   2.9  
Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    29   6.7  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   6.7  
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    29   8.8  
U64849-9|AAC48056.1|  405|Caenorhabditis elegans Hypothetical pr...    29   8.8  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   8.8  

>Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical
           protein F52D10.2 protein.
          Length = 329

 Score =  197 bits (481), Expect = 1e-50
 Identities = 88/167 (52%), Positives = 118/167 (70%), Gaps = 6/167 (3%)

Query: 14  IKVSGENCIEKPLATLWRNYQQSTKPDVVMKLSVTNSGLKGFTKEHGLTEYWSHRITYCA 73
           I   GENC EKPL+ +W+ Y    + D+ M L +T SGLK  TK+ GLTEYW+HRIT+ +
Sbjct: 46  IMARGENCYEKPLSLIWKAYCSRARSDLGMNLEITRSGLKAETKQQGLTEYWAHRITFSS 105

Query: 74  SPPHYPKLFCWVYRHEGKKLKHELRCHAVLCTKESISKKITEELQVKLKQALVEFKKERI 133
           +PP YPK+FCW+Y+H+GK+LK ELRCHAVLC K +    I   LQ  L  AL E+K+E++
Sbjct: 106 APPEYPKVFCWIYKHDGKRLKPELRCHAVLCKKSAEPGIINTRLQNFLHAALQEYKREKL 165

Query: 134 SKQNARLSLANSVYDNPSMPRRKILLSVGSMNYRPPLERSKSAPKLG 180
           S QNARL+       +   PRRK++L  G++N+RPP+ RSKSAP+LG
Sbjct: 166 SAQNARLT------GSAGCPRRKLILQTGTLNFRPPVSRSKSAPRLG 206


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 34.7 bits (76), Expect = 0.13
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 323 ETASTAASD--SEPTSLPSLPQEDK-VAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYP 379
           +TASTA+S   SE +S  +    +K  +E +G+   +  +E + V +GE+NG   + + P
Sbjct: 435 KTASTASSHKASESSSESNAESTEKQTSESSGNESDSEESEDSEVDVGEENGSEVKESRP 494

Query: 380 PLSASILSN 388
             SA  +S+
Sbjct: 495 QTSADTISS 503


>AC024876-11|AAF60895.1|  365|Caenorhabditis elegans Hypothetical
           protein Y94H6A.2 protein.
          Length = 365

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 100 HAVLCTKESIS----KKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDN 149
           + + C K  I     KK TEELQ+K+ +   E++++     +  LSL ++V DN
Sbjct: 142 NGMFCDKNMIGPSRLKKQTEELQLKMNRWAEEYRQDHSYWDDGVLSLIHNVQDN 195


>Z70213-3|CAA94172.1|  194|Caenorhabditis elegans Hypothetical
           protein ZK930.4 protein.
          Length = 194

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 322 CETASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPL 381
           C + + AAS +EP    S+ Q D++ E+   R      + + V + E N    +  +PP 
Sbjct: 77  CLSNTIAASMTEPQV--SMTQVDRMYEDNLAR-----KKRSMVAVSEFNKIYGQEYHPPS 129

Query: 382 SASILSNFEENFESLIDNLTDADSLTSSTET 412
           S+    +F EN +++  +   ++S +SS  T
Sbjct: 130 SSESTRSFYENIDAVYPSSKASESSSSSAST 160


>Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical
           protein C17D12.7 protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 358 SNEVNHVPIGEKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKS 417
           +N+     + EK+  R         ++ L   E+NF+ L++N +   +L++S   E    
Sbjct: 76  TNDTKLSILSEKSEIRSEKHKNKCKSADLDAMEKNFKELLENFSKNAALSNSLRDEASSI 135

Query: 418 VGDSDSACSDESGYSE 433
           +  S SA S +S + E
Sbjct: 136 I--SSSASSQKSLFKE 149


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 324 TASTAASDSEPTSLPSLPQEDKVAEE--TGDRIGNYSNEVNHVPIGEKNGFRRRSTYPPL 381
           T  T   D EPT  P      K++    TG    N   E+  +  G+    + +ST    
Sbjct: 452 TLETVEEDVEPTPSPHPSSPPKISRRKWTGTFDANVE-EMRRLLHGDPG--KPKSTKRAF 508

Query: 382 SASILSNFEENFESLIDNLTDADSLTSSTET-EVFKSVGDSDSACSDESGYSEFLDGKES 440
           S+        +  +    L     LT+S ++ ++ KS+G  DS  +    YS  + GKE+
Sbjct: 509 SSKDQRTPSLSIITSPKALIGEKCLTASNKSSKIDKSLGMIDSKLTKSPMYSATVSGKEA 568

Query: 441 IIGNTI 446
             GN I
Sbjct: 569 TSGNRI 574


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 7/199 (3%)

Query: 248 ASPGSXXXXXXXXXXXXISKESNKDVGTSHEDDKLEAIVETNEIIDTAAANVTECKLSSN 307
           AS  S            ++  S     T+    +   +    +I   + + VT     S+
Sbjct: 507 ASTESTVLQSSTPSGTTVTLPSGSSTATAGTSPQASTVTTVTDISTVSGSTVTSQTAESS 566

Query: 308 FLVTXXXXXXXXXXCETASTAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEVNHVPIG 367
             ++            T ST +S  +P++   +     +        G+ ++       G
Sbjct: 567 --LSTESPTSAGSSISTVSTVSS--QPSTYIPVSSASSIYSTLSGSTGSTASPGTTESSG 622

Query: 368 EKNGFRRRSTYPPLSASILSNFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSACSD 427
                   ST    SAS ++       S I   T++ ++  STE+ V ++   S S+ S 
Sbjct: 623 SSTS--GPSTISGSSASTVTGSTVTEASTISGSTESSTIPGSTESTVSEASTVSGSSVST 680

Query: 428 ESGYSEFLD-GKESIIGNT 445
            SG +E    G  ++ G+T
Sbjct: 681 VSGSTESTSAGASTVSGST 699


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
            protein R06F6.8a protein.
          Length = 1468

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 206  WTRSSFSNDMDNM----SIQTLDRRRPDVKSPRKMSCPEGIMNRLLASPGSXXXXXXXXX 261
            + RS  S D+D +    S +T   RRP V SP   S  E ++NR  A             
Sbjct: 963  FARSIGSEDIDALTPPPSAKTSLSRRPTVSSPSADSSTEFVINRFQAGAAGGRLNKVRHS 1022

Query: 262  XXXISKES-NKD-VGTSHEDDKLEAIVETNEIIDTAAANVTECKLSS 306
                 K++  KD +G S +D    +   + E+    A N    K++S
Sbjct: 1023 QSTEQKDAPRKDSIGGSSKDKMALSWGLSGELSPQLATNRLAAKMTS 1069


>U64849-9|AAC48056.1|  405|Caenorhabditis elegans Hypothetical
           protein K04A8.10 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 27  ATLWRNYQQSTKPDVVMKLSVTNSGLKGFTKEHGLTEYWSHRITYCASPPHYP--KLFCW 84
           +TL+  Y++  K +   K  +  S LK F      T  W + +       H P  KL  W
Sbjct: 170 STLYMGYKEKWKINTFKKNGMIKSFLKVFASMPETTFIWKYEVANATLADHLPNVKLITW 229

Query: 85  VYRHE 89
           + +++
Sbjct: 230 MPQND 234


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 252 SXXXXXXXXXXXXISKESNKDVGTSHEDDKLEAIVETNEIIDTAAANVTECKLSSNFLVT 311
           S             ++ + +   TS +    E+  E+     + + + T  + +S    +
Sbjct: 201 STSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTSTSTDS 260

Query: 312 XXXXXXXXXXCETASTAASDSEPTSLPSLP 341
                      E+ ST+ +DS  TSLP+LP
Sbjct: 261 TTTESTTESTTESTSTS-TDSTTTSLPALP 289


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,250,443
Number of Sequences: 27539
Number of extensions: 391169
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 11
length of query: 448
length of database: 12,573,161
effective HSP length: 84
effective length of query: 364
effective length of database: 10,259,885
effective search space: 3734598140
effective search space used: 3734598140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)