Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002167-TA|BGIBMGA002167-PA|IPR006020|Phosphotyrosine
interaction region
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 32 0.67
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ... 32 0.67
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 30 2.7
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 30 2.7
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 30 2.7
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 30 2.7
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 29 4.8
At5g39500.1 68418.m04783 pattern formation protein, putative sim... 29 6.3
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 29 6.3
At5g13610.1 68418.m01576 expressed protein 29 8.3
At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containi... 29 8.3
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr... 29 8.3
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 32.3 bits (70), Expect = 0.67
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 118 QVKLKQALVEFKKERISKQNARLSLANSVYDNPSMPRRKILLSVGSMNYRPPLERSKSAP 177
+++L + LV+FK+E + +N + + + + ++ R I+ S+ + +ERSKS P
Sbjct: 456 EIELDERLVKFKEEIDNDRNWTAKVQDELISSSNVYRPPIISSIFLQHLSSIIERSKSVP 515
Query: 178 KL 179
L
Sbjct: 516 AL 517
>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
DNA polymerase lambda GI:12053869 from [Arabidopsis
thaliana]
Length = 529
Score = 32.3 bits (70), Expect = 0.67
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 94 KHELRCHAVLCTKESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDN 149
K +L + ++ ++KK+T L + L+ L +F KER+S ARL L + D+
Sbjct: 40 KQKLVQMGAVIEEDRVTKKVTHVLAMNLEALLHKFGKERLSHFTARLMLYQWLEDS 95
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 91 KKLKHELRCH-AVLCTKESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDN 149
K+ H+L ++ ES++ ++ E+L+ + +Q L + + I+ ARL + S+
Sbjct: 867 KQQLHKLEAKLSIFNEAESLTMRVREQLE-RSRQRLYHERAQIIA---ARLGVPPSMSSK 922
Query: 150 PSMPRRKILLSVGSMNYRPPLERSKSAPKL 179
S+P +I + ++ RPP+ + P +
Sbjct: 923 ASLPTNRIAANFANVAQRPPMGMAFPRPPM 952
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 91 KKLKHELRCH-AVLCTKESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDN 149
+K H+L ++ ES++ ++ E+L+ + +Q L + + I+ ARL + S+
Sbjct: 864 EKQLHKLEAKLSIFNEAESLTMRVREQLE-RSRQRLYHERAQIIA---ARLGVPPSMSSK 919
Query: 150 PSMPRRKILLSVGSMNYRPPLERSKSAPKL 179
S+P +I + ++ RPP+ + P +
Sbjct: 920 ASLPTNRIAANFANVAQRPPMGMAFPRPPM 949
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 91 KKLKHELRCH-AVLCTKESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDN 149
+K H+L ++ ES++ ++ E+L+ + +Q L + + I+ ARL + S+
Sbjct: 866 EKQLHKLEAKLSIFNEAESLTMRVREQLE-RSRQRLYHERAQIIA---ARLGVPPSMSSK 921
Query: 150 PSMPRRKILLSVGSMNYRPPLERSKSAPKL 179
S+P +I + ++ RPP+ + P +
Sbjct: 922 ASLPTNRIAANFANVAQRPPMGMAFPRPPM 951
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 91 KKLKHELRCH-AVLCTKESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDN 149
+K H+L ++ ES++ ++ E+L+ + +Q L + + I+ ARL + S+
Sbjct: 866 EKQLHKLEAKLSIFNEAESLTMRVREQLE-RSRQRLYHERAQIIA---ARLGVPPSMSSK 921
Query: 150 PSMPRRKILLSVGSMNYRPPLERSKSAPKL 179
S+P +I + ++ RPP+ + P +
Sbjct: 922 ASLPTNRIAANFANVAQRPPMGMAFPRPPM 951
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 29.5 bits (63), Expect = 4.8
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 107 ESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDNP----SMPRRKILLSVG 162
E +K EE + A E ++E ++++ LS + D P MPRR+ L
Sbjct: 561 EGDEEKGDEEYKWDEDNAEYEEEEEEEEEEDS-LSASEEDSDEPRRAKKMPRRETKLRSR 619
Query: 163 SMNYRPPLERSKSAPKL 179
S ++RP L RSK A ++
Sbjct: 620 SNDFRPGLRRSKRATRI 636
>At5g39500.1 68418.m04783 pattern formation protein, putative similar
to SP|Q42510 Pattern formation protein EMB30 {Arabidopsis
thaliana}; contains Pfam profile PF01369: Sec7 domain
Length = 1443
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 99 CHAVLCTKESISKKITEELQV--KLKQALVEFKKERISKQNARLSLANSVYDNPSMPRRK 156
C +L KE+++ ++ + LQ+ KLK + + ERI+++ RL AN+ + S +
Sbjct: 1078 CQRLLPYKENLTDELLKSLQLVLKLKAKVADAYCERIAQEVVRLVKANASHVR-SRTGWR 1136
Query: 157 ILLSVGSMNYRPP 169
++S+ S+ R P
Sbjct: 1137 TIISLLSITARHP 1149
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 327 TAASDSEPTSLPSLPQEDKVAEET-GDRIGNYSNEVN 362
TAASD++ + + S+P D+ + T GD+ G N+VN
Sbjct: 404 TAASDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVN 440
>At5g13610.1 68418.m01576 expressed protein
Length = 402
Score = 28.7 bits (61), Expect = 8.3
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 326 STAASDSEPTSLPSLPQEDKVAEETGDRIGNYSNEV--NHVPIGEKNGFRRRSTYPPLSA 383
S S +P+SLPSLP + + +SN V ++ PI + GFR T +S+
Sbjct: 22 SIFTSQQKPSSLPSLPFHFSLRSSSNIPTRCFSNVVAKSNSPIYDFQGFRNLFTERAISS 81
Query: 384 S 384
S
Sbjct: 82 S 82
>At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 572
Score = 28.7 bits (61), Expect = 8.3
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 39 PDVVMKLSVTNSGLKGFTKEHGLTEYWSHRITYCASPPHYPKLFCWVYRHEGKK----LK 94
P V++ S N G + K L E W + A+PP + W+Y K
Sbjct: 433 PLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTN 492
Query: 95 HELRCHAVLCTKESISKKITEELQVKL 121
E+R H S + E+ QV++
Sbjct: 493 DEMRDHLFQLLGNSFFPRWKEKHQVRI 519
>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
protein / kinesin motor family protein
Length = 919
Score = 28.7 bits (61), Expect = 8.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 103 LCTKESISKKITEELQVKLKQALVEFKKERISKQNARLSLANSVYDNPSMPRRKI 157
L KE+ SK EE +LK L EFKK S N+ + + + +N + + K+
Sbjct: 540 LLQKEAQSKMAAEEEVNRLKHQLNEFKKVEAS-GNSEIMRLHKMLENETQQKEKL 593
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.127 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,841,554
Number of Sequences: 28952
Number of extensions: 377268
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 12
length of query: 448
length of database: 12,070,560
effective HSP length: 83
effective length of query: 365
effective length of database: 9,667,544
effective search space: 3528653560
effective search space used: 3528653560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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