Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002166-TA|BGIBMGA002166-PA|undefined
(210 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 1.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 1.5
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 26 3.5
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 26 3.5
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 3.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 4.7
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 6.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.2
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 25 6.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 8.2
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 8.2
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 56 HNPRILADKSMSLTVVPQQASIAASTGPSQPTHRAS 91
H P + DK++ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 42 SLSYPKLRIKNFGYHNPRILADKSMSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCL 101
+LS P +N P LA + S ++V Q + G + T R +H L
Sbjct: 549 ALSVPLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERVMHSL 608
Query: 102 ITPLQFIAAHDR 113
+ P+ HD+
Sbjct: 609 MRPVPLDLPHDQ 620
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 28 YRAISPARWKIFPLSLSYPKLRIKNFGYHNPRILADKSMSLTV 70
YR SP + +F +L+ +I + HNPR++ ++ + V
Sbjct: 346 YRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEV 388
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 3.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 134 QAQSRLTADFEQHWRQS----RSIQLSFDSLQISSSTGDTHAAFKLSLDSLQASSSIGPC 189
Q +L AD + S +S+ S ++L +SSS HA L L +L A+ S
Sbjct: 53 QGLEKLNADSSNFYCNSLTSNQSLTTSMEALDLSSSLTTPHADKLLKLSNLIAAKSFTTE 112
Query: 190 KLISARTTLTKND 202
+ +SA L +
Sbjct: 113 RKLSAAEFLDSRE 125
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 36 WKIFPLSLSYPKLRIKNFGYHNPRILADKSMSLTV 70
W+++ S S K R K+ +N I+AD SL V
Sbjct: 996 WEVWMYSQSEKKHRCKSLKMYNSLIIADPGPSLAV 1030
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 144 EQHWRQSRSIQLSFDSLQISSST 166
E+HW+Q QL+ +S QI ST
Sbjct: 609 EKHWKQESKPQLTGNSRQIDLST 631
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 41 LSLSYPKLR-IKNFGYHNPRILADKSMSLTVVPQQASIAASTG 82
++LS P L+ + N G+ P + DK++ L ++ + AA TG
Sbjct: 264 MNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTG 306
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 152 SIQLSFDSL-QISSSTGDTHAAFKLSLDSLQASSSIGPCKLISARTTLTKNDTTFS 206
S LS S+ SSS+ T ++ S S ASSS +IS+ ++ + + T+ S
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTS 287
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 133 IQAQSRLTADFEQHWRQSRSIQLSFDSLQISSSTGDTHA 171
I+ Q ++ +F++ ++ R L F +L SSS D H+
Sbjct: 154 IEMQEKVLKNFQRLQKEFREEGLEFITLDASSSLEDVHS 192
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 8.2
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 65 SMSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPA 124
S S ++ +S AAST S + S S T + ++ + ++ TSPA
Sbjct: 17 SASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSS-SFTSPA 75
Query: 125 WQARHARNIQAQSRLTADFEQHWRQSRSIQLSFDSLQISSSTGDTHAAFKLSLDSLQASS 184
+ + + S+ ++ S S L+ S +S+ +HA S + +SS
Sbjct: 76 SSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSS 135
Query: 185 SIG 187
S G
Sbjct: 136 SSG 138
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 37 KIFPLSLSYPKLRIKNFGYHNPRILADKSMSLTVVPQQASIAASTGPS 84
+I L+LS+ + R +F ++ PR+ +S+ + V S A S S
Sbjct: 439 RINTLALSFTRTRDSHFAFNLPRVRQGQSLPIKRVDALRSSANSIASS 486
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 126 QARHARNIQAQSRLTADFEQHW-RQSRSIQLSFDSLQISSSTGDTHAAFKLSLDSLQ 181
Q R ARN + Q +++++ E+ W ++ + S T D H + ++L+ L+
Sbjct: 216 QGRDARNYREQYKISSENEKRWFTIIYCADNKLKAMHMISPTLDAHNQWIMALEGLK 272
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.129 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,049
Number of Sequences: 5004
Number of extensions: 35492
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 15
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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