GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002166-TA|BGIBMGA002166-PA|undefined
         (210 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 17  KFRTTTFGPSVYRAISPARWKIF---PLSLSYPKLRIKNFGYHN-PRILADKSMSLT--- 69
           +F+T T+   +Y  ++P +   F    L + Y +    +F + N      D ++ +T   
Sbjct: 47  EFKTRTY--FIYAFVAPVKCLAFFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEITEVA 104

Query: 70  -VVPQQASIAASTGPSQPTHRASWSYG 95
            V+P   + A+S G   P H +S+  G
Sbjct: 105 PVLPGNYANASSVGSRNPIHTSSYMTG 131


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 17  KFRTTTFGPSVYRAISPARWKIF---PLSLSYPKLRIKNFGYHN-PRILADKSMSLT--- 69
           +F+T T+   +Y  ++P +   F    L + Y +    +F + N      D ++ +T   
Sbjct: 280 EFKTRTY--FIYAFVAPVKCLAFFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEITEVA 337

Query: 70  -VVPQQASIAASTGPSQPTHRASWSYG 95
            V+P   + A+S G   P H +S+  G
Sbjct: 338 PVLPGNYANASSVGSRNPIHTSSYMTG 364



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 56   HNPRILADKSMSLTVVPQQASIA 78
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 17  KFRTTTFGPSVYRAISPARWKIF---PLSLSYPKLRIKNFGYHN-PRILADKSMSLT--- 69
           +F+T T+   +Y  ++P +   F    L + Y +    +F + N      D ++ +T   
Sbjct: 280 EFKTRTY--FIYAFVAPVKCLAFFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEITEVA 337

Query: 70  -VVPQQASIAASTGPSQPTHRASWSYG 95
            V+P   + A+S G   P H +S+  G
Sbjct: 338 PVLPGNYANASSVGSRNPIHTSSYMTG 364



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 56   HNPRILADKSMSLTVVPQQASIA 78
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,875
Number of Sequences: 317
Number of extensions: 1755
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 210
length of database: 114,650
effective HSP length: 54
effective length of query: 156
effective length of database: 97,532
effective search space: 15214992
effective search space used: 15214992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)