GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002166-TA|BGIBMGA002166-PA|undefined
         (210 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     30   1.2  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    30   1.2  
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539     29   2.8  
09_01_0108 - 1695679-1696390,1696640-1696811,1696941-1696962           29   3.7  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   4.8  

>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 1    MPESRLRHFQDKAHIYKFRTTTFGPSVYRAISPARWKIFPLSLSYPKLRIKNFGYHNPRI 60
            M   +LRH+     +    +   G  ++      R   + + LS   L  +       + 
Sbjct: 976  MASRKLRHYFQAHRVTVVTSYPLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQA 1035

Query: 61   LADKSMSLTVVPQQASIA-ASTGPSQPTHRASW 92
            LAD     T  P+  SI  AST PSQ  H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 78  AASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQ 126
           A+STG  +P    +W+ G++   L   L F AA+  ++  + +    WQ
Sbjct: 26  ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74


>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
          Length = 1908

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 1    MPESRLRHFQDKAHIYKFRTTTFGPSVYRAISPARWKIFPLSLSYPKLRIKNFGYHNPRI 60
            M   +LRH+     +    +   G  ++      R   + + LS   L  +       + 
Sbjct: 1219 MASRKLRHYFQAHRVTVVTSYPLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQA 1278

Query: 61   LADKSMSLTVVPQQASIA-ASTGPSQPTHRASW 92
            LA+  +  T  P+  SI  AST PSQ  H A W
Sbjct: 1279 LANFVVEWTPAPEPVSIPEASTDPSQLPHTAHW 1311


>09_01_0108 - 1695679-1696390,1696640-1696811,1696941-1696962
          Length = 301

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 81  TGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQARHARNIQAQSRLT 140
           T PS PT +    + T++HC  T L       ++   W        A  AR   A S   
Sbjct: 2   TRPS-PTEQIKIKFSTKIHCATTTLTVGTQRPKVGLVW---LTKGSAEPARQRSAASLFE 57

Query: 141 ADFEQHWRQSRSIQLSFDSLQISSSTGD---THAAFKLSLDSLQA 182
           A      R  R +   F     SSS  D    H++  +S++  +A
Sbjct: 58  ATASGPHRMRRQLSRLFKGSGFSSSHHDESSAHSSADVSIEDAEA 102


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 35  RWKIFPLSLSYPKLRIKNFGYHNPRILADKSMSLTVVPQQAS-IAASTGPSQ 85
           R K+FP +L +  L       H  R+ A +  S+ +VP   S  + ST P+Q
Sbjct: 473 RNKVFPEALFHQLLLAMVHPDHETRVSAHRIFSVVLVPSSVSPFSKSTSPNQ 524


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,082,670
Number of Sequences: 37544
Number of extensions: 225152
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 5
length of query: 210
length of database: 14,793,348
effective HSP length: 79
effective length of query: 131
effective length of database: 11,827,372
effective search space: 1549385732
effective search space used: 1549385732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)