GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002166-TA|BGIBMGA002166-PA|undefined
         (210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.17 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.69 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 6   LRHFQDKAHIYKFRTTTFGPSVYRAIS-PARWKIFPLSLSYPKLRIKNFGYHNPRI-LAD 63
           L H      +Y+ +T  +   ++  I+    ++++P+ +    + I++F YH  ++ L  
Sbjct: 89  LNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQICPIYIESFSYHKQKLRLRW 148

Query: 64  KSMSLTVVPQ 73
            + ++TV P+
Sbjct: 149 GTGAVTVNPE 158


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 131 RNIQAQSRLTADFEQHWRQSR 151
           RN +  S L +D EQH+RQ R
Sbjct: 712 RNSEMFSSLLSDTEQHFRQHR 732



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 131 RNIQAQSRLTADFEQHWRQSRSIQLSFDSLQISSSTGDTHAAFKLSLDSL 180
           R++       AD  ++   S    ++ +S   SS   DT   F+   DSL
Sbjct: 686 RSVANSPTKNADSREYRSNSMGAVMTRNSEMFSSLLSDTEQHFRQHRDSL 735


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 57  NPRILADKSMSLTVVPQQASIAASTGPSQ 85
           NPRI +  S S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,082
Number of Sequences: 429
Number of extensions: 2180
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 140,377
effective HSP length: 55
effective length of query: 155
effective length of database: 116,782
effective search space: 18101210
effective search space used: 18101210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)