GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002166-TA|BGIBMGA002166-PA|undefined
         (210 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    30   1.3  
At3g10650.1 68416.m01281 expressed protein                             28   5.3  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    28   5.3  
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    27   7.0  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    27   7.0  
At3g12540.1 68416.m01560 expressed protein contains Pfam profile...    27   9.3  

>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P46100
           Transcriptional regulator ATRX {Homo sapiens}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain;
           non-consensus GC donor splice site at exon boundary
           28614
          Length = 1457

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 122 SPAWQARHARNIQAQSRLTADFEQHWRQSRSIQLSFDSLQISSSTG---DTHAAFKLSLD 178
           S  W       I  Q RLT + E+  R  +SI+LS DS   SSS     DT A   +++ 
Sbjct: 533 SSGWDCCCCSPIPLQ-RLTLELEKAMRDKKSIELSSDSSSDSSSDNNSVDTDADVNVTIS 591

Query: 179 SLQAS 183
           S + S
Sbjct: 592 SKKKS 596


>At3g10650.1 68416.m01281 expressed protein
          Length = 1309

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 154  QLSFDSLQISSSTGDTHAAFKLSLDSLQASSSIGPCKLISARTTLTKNDTTFSLGG 209
            QLS  +   SSS+  +   F  S  +  +S + GP  + S+  T +   TTFS GG
Sbjct: 1070 QLSSTNSSASSSSTMSSPLFGTSWQAPNSSPNSGP--VFSSSFTTSSTPTTFSFGG 1123


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
            Pfam PF04054: CCR4-Not complex component, Not1; contains
            TIGRFAM TIGR01612: reticulocyte binding protein; similar
            to General negative regulator of transcription subunit 1
            (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
            gb|T44328 and gb|AA395265
          Length = 2378

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 135  AQSRLTADFEQHWRQSRSIQLSFDSLQISSSTGD 168
            +Q R+  DF QH  Q +S Q S      SSS+GD
Sbjct: 1465 SQQRVYEDFVQHPWQKQSTQTSHGLSAASSSSGD 1498


>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 53  FGYHNPRILADKSMSLTVVPQQASIAASTGPSQ-PTHRAS 91
           FGY   +I ADKS   TV+P Q     +  PS  P+ R S
Sbjct: 477 FGYQTAQIPADKS-KRTVIPDQPPTVNTYNPSPLPSDRIS 515


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 53   FGYHNPRILADKSMSLTVVPQQASIAASTGPSQPTH 88
            F   NPRIL D S+SL   P QA +  S  PS   H
Sbjct: 1646 FPDENPRILVDGSISLQ-KPVQADLIGSKVPSPFLH 1680


>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 503

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 131 RNIQAQSRLTADFEQHWRQSRSIQLSFDSLQISSSTGDTHAAFKLSLDSLQASSSIGPCK 190
           R +Q Q+ L  D +    + RS  L   S   S S GD H    + ++S +  +SIG   
Sbjct: 93  RLLQRQNHLPCDADNDLIKMRSEDLKQRSK--SQSYGDHHVVKDIQMNSPRTHASIGSTM 150

Query: 191 LISARTTLTKNDTTFSLG 208
             S+R     + +TFS G
Sbjct: 151 EFSSRI----HSSTFSDG 164


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,837,622
Number of Sequences: 28952
Number of extensions: 177426
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 12,070,560
effective HSP length: 78
effective length of query: 132
effective length of database: 9,812,304
effective search space: 1295224128
effective search space used: 1295224128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)