GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002165-TA|BGIBMGA002165-PA|undefined
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.9  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.5  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    26   4.4  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 4   ENERNCIETAAKTQSDRSQDAEKTLSDCKP----NGLRVRFLDEEGK 46
           E+  N   T    Q+D +Q  ++T+SD  P    N  + +FL EE K
Sbjct: 793 ESADNSNNTNVSFQTDETQTEDETMSDIHPDDVENHSKSKFLGEESK 839


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 35  GLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHILKNRSSSE--TSILLRNPSLLKRRSS 92
           G  +R+  E+GK E   +A  VD     +  +H+L    +++  +SI  +   L+ R S 
Sbjct: 27  GRAIRYCKEDGKVEGCETASHVDF----LNHIHLLLGNYNNDLASSIEKKKSELIVRNSE 82

Query: 93  EHRLVDCHTD 102
              ++D H +
Sbjct: 83  GLPVMDIHEE 92


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 17 QSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVD 57
          Q +  +DA +T SD     + V  LD  G+  ++++ DEVD
Sbjct: 36 QLEIEKDAGETDSDAGSIAMNVHQLDTAGEPLQSMNEDEVD 76


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,885
Number of Sequences: 5004
Number of extensions: 37184
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 3
length of query: 246
length of database: 2,362,478
effective HSP length: 71
effective length of query: 175
effective length of database: 2,007,194
effective search space: 351258950
effective search space used: 351258950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)