GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002165-TA|BGIBMGA002165-PA|undefined
         (246 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0669 + 12779583-12779675,12779942-12780124,12780266-127804...    31   0.86 
03_02_0091 + 5574528-5577254                                           29   3.5  
01_03_0139 - 12972378-12973220                                         29   3.5  
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136...    28   8.1  
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148...    28   8.1  

>02_02_0669 +
           12779583-12779675,12779942-12780124,12780266-12780481,
           12780590-12780952,12781453-12781612,12781724-12781827
          Length = 372

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/73 (26%), Positives = 36/73 (49%)

Query: 1   MARENERNCIETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSV 60
           M  ++E  C E AA  ++++++  E+        GL+ + + E  + ER   A E++   
Sbjct: 113 MEVDSEEECEEMAADVEAEQAKGKEQEAIQNDAGGLKGKSVMECAQDERMFVAVEIEKHY 172

Query: 61  TRVKKVHILKNRS 73
             VKKV  ++  S
Sbjct: 173 KEVKKVKTVQLES 185


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 172 AHKPAEGKSILPAEVCLAEG--------LSGKDFTARAIGRLSRGIGK--LLRRSNSVRI 221
           A +P+ G  ++P+ V   EG        L  +D    AI  ++ G+GK  LLRR N+V +
Sbjct: 139 APRPSSGAMVVPSTVVGMEGYLEEALACLDDRDAGVVAICGMA-GVGKSTLLRRINNVFV 197

Query: 222 SEPDPVYKVAYL 233
            +PD  ++  Y+
Sbjct: 198 QDPDRRHEFDYV 209


>01_03_0139 - 12972378-12973220
          Length = 280

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 151 QAKTLTPERKKSIPLMMPRLLAHKPAEGKSI-LPAEVCLAEGLSGKDFTARAIGRLSRGI 209
           Q   L P R  + P+++P+ + H+ +  KS  +P +V  A   + K    R+ GRLS G+
Sbjct: 17  QNSVLQPRRFHNPPIVLPKKMVHRASLHKSANVPTQVKAAVLAALK----RSNGRLSNGV 72

Query: 210 GKLLR 214
             + R
Sbjct: 73  AAIQR 77


>04_04_0295 -
           24212526-24212684,24213066-24213218,24213497-24213601,
           24213694-24213913,24214033-24214199,24214323-24214497,
           24214627-24214799,24214914-24214983,24215401-24215900
          Length = 573

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 168 PRLLAHKPAEGKSILPAEVCLAEGLSGKDFTARAIGRLSRGIGKLLRRSNSVRIS 222
           PR     P  G  +LPA      GLS ++   RAI  +   +G+L RR   V ++
Sbjct: 17  PRRRKPAPGRGGVVLPA------GLSEEEARVRAIAEIVSAMGELSRRGEDVDLN 65


>03_06_0449 -
           34013973-34014056,34014595-34014630,34014729-34014816,
           34015034-34015143,34015611-34015715,34015812-34015903,
           34016145-34016232,34016407-34016526,34016603-34016721,
           34017253-34018126
          Length = 571

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 17  QSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEV 56
           +S +S D+ + ++D KP   R R LD+ GK  R  + D V
Sbjct: 218 ESKKSDDSGQ-IADEKPRPRRTRVLDKTGKKIRVANKDPV 256


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,539,931
Number of Sequences: 37544
Number of extensions: 249300
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 5
length of query: 246
length of database: 14,793,348
effective HSP length: 80
effective length of query: 166
effective length of database: 11,789,828
effective search space: 1957111448
effective search space used: 1957111448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)