Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002165-TA|BGIBMGA002165-PA|undefined
(246 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18) 36 0.041
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_28072| Best HMM Match : VWA (HMM E-Value=0) 31 1.2
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_38239| Best HMM Match : YopE (HMM E-Value=7.2) 30 2.0
SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27) 29 2.7
SB_52737| Best HMM Match : B_lectin (HMM E-Value=7.6) 29 3.6
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 8.2
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 28 8.2
>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
Length = 1022
Score = 35.5 bits (78), Expect = 0.041
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 9 CIETAAKTQSDRSQDAEKTLSDCKPNGLRVR-FLDEEGKTERTVSADEVDCSVTRVKKVH 67
CI+TAAK + + + A++ ++ +GL VR L+ EGK E S+ + + +K +
Sbjct: 484 CIKTAAKKKMSKDKKADEAENEHSRDGLDVRSSLEREGKVESKWSSQSSILTNSSEEKTN 543
Query: 68 ILKNRSSSETSILLRNPSLLKRRSSEHR 95
K S E L+R SL + SSE++
Sbjct: 544 NDKLELSDEDYKLMR-ASLEEEFSSENK 570
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 32.7 bits (71), Expect = 0.29
Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 17 QSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHILKNRSSSE 76
+S+ EK LS+ + +++ ++E+ E+ ADEV+ T VK + ++ + S S+
Sbjct: 375 RSENLSKMEKKLSETQE---KLQDMEEKFSKEKRAWADEVESLETDVKSLQLISDESESK 431
Query: 77 TSILLRNPSLLKRRSSEHRLVDCHTDXXXXXXXXXXXXXXXXXGKVEPSDADGGEQTKES 136
L S L+ E+R + + ++ + E K +
Sbjct: 432 ---LREAQSSLREYREENRKLKRELEKFETSMDNKDNEFNAPAKTIKEVKKENSELVKRN 488
Query: 137 NGLFKKNCNVYSVHQAKTLTPERKKSIPLMMPRLLAHKPAEGKSILPAE 185
L +K + S+ + +++ +++ S+ RLL K A IL AE
Sbjct: 489 TELEEK---LGSIDEKLSISLKKEFSVTEENERLLREKKALESRILDAE 534
>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
Length = 2979
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 15 KTQSDRS-QDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHI 68
+T+ D++ AE+ +D +P R+ F+ +GK + A +D S R+KK+ +
Sbjct: 94 RTRIDKALMMAEEVFADARPTVPRIAFILTDGKQTQDYDAIPLDVSSQRLKKMGV 148
>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 35 GLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHILKNRSSSETSILLR 82
G R F E+ K +TV DE+ V + I K R + ETS +L+
Sbjct: 612 GRRRHFASEDTKKLQTVCHDEITSDVVPTRTSIIRKLRGNQETSAILQ 659
>SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)
Length = 247
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 35 GLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHILKNRSSSETSILLR 82
G R F E+ K +TV DE+ V + I K R + ETS +L+
Sbjct: 175 GRRRHFASEDTKKLQTVCHDEITSDVVPTRTSIIRKLRGNQETSAILQ 222
>SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)
Length = 745
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 35 GLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHILKNRSSSETSILL 81
G R F E+ K +TV DE+ V + I K R + ETS +L
Sbjct: 673 GRRRHFASEDTKKLQTVCHDEITSDVVPARTSIIRKLRGNQETSAIL 719
>SB_52737| Best HMM Match : B_lectin (HMM E-Value=7.6)
Length = 187
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 179 KSILPAEVCLAEGLSGKDFTARAIGRLSRGIGKLLRRSNSVRISEPDP 226
K + A +CLA +DF +RA+ + G+ L + + + P P
Sbjct: 34 KGLGEACLCLARSALAEDFNSRAVDHVGEGLHALANPGDPLVLERPPP 81
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 184 AEVCLAEGL-SGKDFTARAIGRLSRGIGKLLRRSNSVRISEPDP 226
A C+ EGL SGK+F R R G+G ++ E +P
Sbjct: 884 ARSCIVEGLDSGKEFWVRVYARNRAGLGSEAETVARTKMLEENP 927
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/52 (36%), Positives = 22/52 (42%)
Query: 171 LAHKPAEGKSILPAEVCLAEGLSGKDFTARAIGRLSRGIGKLLRRSNSVRIS 222
LA PA G LP E G SGK G L + ++LR V IS
Sbjct: 515 LATSPAYGTIYLPEEYGSGGGSSGKSSGGSGGGCLIFDVSEMLRLEGEVTIS 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,526,627
Number of Sequences: 59808
Number of extensions: 277721
Number of successful extensions: 513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 9
length of query: 246
length of database: 16,821,457
effective HSP length: 80
effective length of query: 166
effective length of database: 12,036,817
effective search space: 1998111622
effective search space used: 1998111622
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
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