GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002165-TA|BGIBMGA002165-PA|undefined
         (246 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81051-8|CAB02869.1|  425|Caenorhabditis elegans Hypothetical pr...    29   4.1  
X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic int...    29   4.1  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    29   4.1  
U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate fi...    29   4.1  
U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate fi...    29   4.1  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   9.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   9.4  

>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 131 EQTKESNGLFKKNCNVYSVHQAKTL---TPERKKSIPLMMPRLLAHKPAEGKSILPAE 185
           +Q K  N +F   C+    H+       + +R       +PR++ H P+ G S+LP E
Sbjct: 400 KQLKTENVIFCNKCSYEYFHETSKFLAHSQQRHDGTATAVPRMIKHIPSGGTSLLPCE 457


>Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical
           protein F52D10.2 protein.
          Length = 329

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 214 RRSNSVRISEPDPVYKVAYLGNVLTGWARGKS 245
           ++     I+ P+  Y V YLGNVLT  ARG++
Sbjct: 21  KKKQRYTINPPEESYNVIYLGNVLTIMARGEN 52


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
           protein Y38C9A.1 protein.
          Length = 1484

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 128 DGGEQTKESNGLFKKNCNVYSVHQAKTL-TPERKK 161
           DG +  ++SN LFK N  VYSV     + T ER+K
Sbjct: 790 DGHKVVRQSNSLFKVNVEVYSVMDELVMSTLEREK 824


>Z81051-8|CAB02869.1|  425|Caenorhabditis elegans Hypothetical
           protein C55A6.9 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 54  DEVDCSVTRVKKVHILKNRSSSETSILLRNPSLLKRRSSEHR 95
           +EVDC+V   +K  +  +R S  T +  RNPS L+++    R
Sbjct: 314 NEVDCNVKMTRKPKMALSRKSKLT-LTYRNPSELEQKDMNKR 354


>X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 11  ETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEV 56
           E + KT   RS     T+S+C PNG  ++  +     +  V   ++
Sbjct: 432 EVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKI 477


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 2   ARENERNCIETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSVT 61
           A++N  +  +   +T+ D+     K LS+ +     ++ L  + + E++    E+    +
Sbjct: 140 AKKNLESSFQLRVQTREDKRSQM-KILSNLEAENSYIKRLTTDCEEEKSRVHSEISRLRS 198

Query: 62  RVKKVHILKNRSSSETSILLRNPSLLKR 89
            +K+VH L+++  S+ S    +  LLKR
Sbjct: 199 DIKRVHALRDKERSKHS--SSSQELLKR 224


>U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform a protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 11  ETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEV 56
           E + KT   RS     T+S+C PNG  ++  +     +  V   ++
Sbjct: 432 EVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKI 477


>U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform b protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 11  ETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEV 56
           E + KT   RS     T+S+C PNG  ++  +     +  V   ++
Sbjct: 463 EVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKI 508


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 129 GGEQTKESNGLFKKNCNVYSVHQAKTLTP-ERKKSIPLMMPRLLAHKPAE 177
           G  +T +++   +  C++  +++   LT    K ++PL +PR+++ KP E
Sbjct: 131 GCAKTLKNDEATRFGCSIDLLYKRNVLTGLNLKYTVPLEVPRVISQKPGE 180


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 5    NERNCIETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSVTRVK 64
            NE+  + T    Q D S+         +   L+ RF++   + + T SA E+D     ++
Sbjct: 1121 NEKMALSTMLSRQDDYSRVEHIVKDKNRGANLKFRFIESSEEKQTTFSAFEIDTEKEEIE 1180

Query: 65   K 65
            +
Sbjct: 1181 R 1181


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 5    NERNCIETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSVTRVK 64
            NE+  + T    Q D S+         +   L+ RF++   + + T SA E+D     ++
Sbjct: 5967 NEKMALSTMLSRQDDYSRVEHIVKDKNRGANLKFRFIESSEEKQTTFSAFEIDTEKEEIE 6026

Query: 65   K 65
            +
Sbjct: 6027 R 6027


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,475,162
Number of Sequences: 27539
Number of extensions: 205872
Number of successful extensions: 443
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 11
length of query: 246
length of database: 12,573,161
effective HSP length: 80
effective length of query: 166
effective length of database: 10,370,041
effective search space: 1721426806
effective search space used: 1721426806
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)