GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002165-TA|BGIBMGA002165-PA|undefined
         (246 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20920.1 68417.m03032 double-stranded RNA-binding domain (DsR...    31   0.95 
At4g37440.1 68417.m05299 expressed protein                             29   3.8  
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    28   6.7  
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    27   8.9  

>At4g20920.1 68417.m03032 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 870

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 10  IETAAKTQSDRSQDAEKTLSDCKPNGLRVRFLDEEGKTERTVSADEVDCSVTRVKKVHIL 69
           +  A  TQ DRS      LSD       VR L  +G TE+ + AD    S+++ +  +++
Sbjct: 620 VTAATGTQRDRS-----LLSDVAGFEYCVRLLGVKGPTEKRIEADFFKPSLSKQRLEYVV 674

Query: 70  KNRSSSETSILL 81
           K+   S  S L+
Sbjct: 675 KHIKESSASTLV 686


>At4g37440.1 68417.m05299 expressed protein
          Length = 471

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 142 KNCNVYSVHQAKTLTPERKKSIPLMMPRLLAHKPAEGKSILP 183
           K+ +V S H    ++PE  ++  +++  +LA K  EGKSI+P
Sbjct: 355 KSASVSSHH----VSPEDDETTDILLSEILASKRREGKSIIP 392


>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 129 GGEQTKESNGLFKKNCNVYSVHQAKTLTPERKKSIPLMMPRLLAHKPA-EGKSILPAEVC 187
           GGE+ +E N       +  SV + +   PE+    P   P+ L H      +S       
Sbjct: 162 GGEEEEEENNAAVTTESDISVKEEEVSLPEKITEAPSSPPQFLEHSDGLNYRSFTDLRDL 221

Query: 188 LAEGLSGKDFTARAIGRLSRGIGKLLRRSNSVRISEPDPV 227
           L    +   F A A    S     LL   +S  ++   PV
Sbjct: 222 LPLKAAASSFAAAAGSSDSSDSSALLNEESSSNVTVAAPV 261


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 126 DADGGEQTKESNGLFKKNCNVYSVHQAKTLTPERKKSIPLMMPRLLAHKPAEGKSIL 182
           D D  E+ +    + + +C + + H       E+ K  P + P      PA GKSIL
Sbjct: 894 DDDSEEEKEPYVTMEEDDCVIINEHTVFDHIREKAKCFPSLNPLNPTSSPASGKSIL 950


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,383,222
Number of Sequences: 28952
Number of extensions: 206899
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 4
length of query: 246
length of database: 12,070,560
effective HSP length: 79
effective length of query: 167
effective length of database: 9,783,352
effective search space: 1633819784
effective search space used: 1633819784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)