GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
         (93 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    19   6.5  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    19   6.5  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock
          cognate 70 protein.
          Length = 196

 Score = 19.4 bits (38), Expect = 6.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 18 KHCVYVYRAKKRTPIPGGPR 37
          ++C   ++ K +  I G PR
Sbjct: 67 EYCTQDFKKKHKADISGNPR 86


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock
          protein 70 protein.
          Length = 196

 Score = 19.4 bits (38), Expect = 6.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 18 KHCVYVYRAKKRTPIPGGPR 37
          ++C   ++ K +  I G PR
Sbjct: 67 EYCTQDFKKKHKADISGNPR 86


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,848
Number of Sequences: 317
Number of extensions: 669
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 93
length of database: 114,650
effective HSP length: 48
effective length of query: 45
effective length of database: 99,434
effective search space:  4474530
effective search space used:  4474530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)