GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    71   2e-14
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    69   9e-14
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    23   9.8  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    23   9.8  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
          L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 71.3 bits (167), Expect = 2e-14
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 8/72 (11%)

Query: 3  VEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRA 62
          +EG   + +A FY GK   YVY++ K        RG  +K+R IWG + RPHGNSG+VRA
Sbjct: 33 IEGCDSKEEAQFYLGKRVCYVYKSSKAV------RG--SKIRVIWGTIARPHGNSGAVRA 84

Query: 63 KFKSNLPAQAMG 74
          +F  NLPA+  G
Sbjct: 85 RFVHNLPAKTFG 96


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
          L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 69.3 bits (162), Expect = 9e-14
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 8/72 (11%)

Query: 3  VEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRA 62
          +EG   + +A FY GK   +VY++ K  P+ G      +K+R IWG V+RPHGNSG VRA
Sbjct: 33 IEGCDSKEEAQFYLGKRICFVYKSNK--PVRG------SKIRVIWGTVSRPHGNSGVVRA 84

Query: 63 KFKSNLPAQAMG 74
          +F  NLP +  G
Sbjct: 85 RFTHNLPPKTFG 96


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 101

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 3  VEGAKDRNDAVFYAGKHCVYVYRAKK 28
          V+ A   ND V +A  +C Y +  +K
Sbjct: 8  VDSAVADNDVVVFAKSYCPYCHATEK 33


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 3/19 (15%)

Query: 7  KDRNDAVFYAGKH---CVY 22
          K +  ++FYAGKH   CVY
Sbjct: 72 KTKLSSLFYAGKHEYFCVY 90


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,690
Number of Sequences: 5004
Number of extensions: 11923
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 2,362,478
effective HSP length: 62
effective length of query: 31
effective length of database: 2,052,230
effective search space: 63619130
effective search space used: 63619130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)