Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
(93 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 81 1e-16
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 78 1e-15
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 75 8e-15
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 26 3.5
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 26 3.5
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 26 3.5
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579... 26 4.6
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208... 26 4.6
11_01_0281 + 2086674-2087652,2089200-2089483 25 6.1
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 25 6.1
10_05_0024 + 8203010-8203948,8204042-8204683 25 6.1
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 25 6.1
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 25 6.1
01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535... 25 6.1
12_01_0285 + 2120130-2121204,2122842-2123116 25 8.1
11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895... 25 8.1
07_03_1061 + 23651404-23651625,23651764-23652954 25 8.1
03_01_0588 - 4354195-4355184 25 8.1
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 81.0 bits (191), Expect = 1e-16
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 8/76 (10%)
Query: 1 MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
+ +EG + + +Y GK YVY+AK ++ GG T R IWGKVTRPHGNSG V
Sbjct: 35 VQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVV 86
Query: 61 RAKFKSNLPAQAMGHR 76
RAKFKSNLP +MG +
Sbjct: 87 RAKFKSNLPPASMGRK 102
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 77.8 bits (183), Expect = 1e-15
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 8/76 (10%)
Query: 1 MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
+ +EG + + +YAGK YVY+AK ++ + +R IWGKVTRPHGNSG V
Sbjct: 34 LQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVV 85
Query: 61 RAKFKSNLPAQAMGHR 76
RAKF+SNLP +MG +
Sbjct: 86 RAKFRSNLPPTSMGKK 101
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 74.9 bits (176), Expect = 8e-15
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 8/73 (10%)
Query: 1 MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
+ +EG + + +YAGK YVY+AK ++ + +R IWGKVTRPHGNSG V
Sbjct: 34 LQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVV 85
Query: 61 RAKFKSNLPAQAM 73
RAKF+SNLP +M
Sbjct: 86 RAKFRSNLPPTSM 98
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 VEGAKDRNDAVFYAGKHC-VYVYRAKKRTPIPGGPRGKKTKLR 44
++ ++ V A +H + V + K +TP+P G +KLR
Sbjct: 222 LQDGREFEGTVLNADRHSDIAVVKIKSKTPLPSANLGSSSKLR 264
>06_03_0473 +
21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 38 GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 75
GK + L A+ G++ R G SG+VR P + H
Sbjct: 448 GKSSLLCALLGEIPRTSGMSGTVRDNILFGKPFENFDH 485
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 26 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 75
AK PI G T R +VT PH + R K++ P ++ +
Sbjct: 298 AKIEAPITDNKTGTNTSKRGSHLQVTNPHPAKQAKRTPIKNDTPKRSASY 347
>12_01_1110 +
11756814-11757485,11757566-11757644,11757705-11757991,
11758072-11758131,11758311-11758976
Length = 587
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 29 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPA 70
R P+ G R +KTK AI V P + ++K +LPA
Sbjct: 254 REPVDAG-RKRKTKTSAIDPSVLAPKKKAKKKKSKLADDLPA 294
>03_01_0269 +
2080338-2080508,2081086-2081335,2081432-2082648,
2082933-2083083,2083247-2083563
Length = 701
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 31 PIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKS-NLPA 70
P+ G K + RA+ GKV HG++ F N+PA
Sbjct: 47 PLQEGGSLKSKEARALLGKVENQHGHAEEALRVFSGINMPA 87
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 31 PIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSN 67
P P + KK ++W TRP+ G +AK +N
Sbjct: 99 PPPPNKKSKKKNSNSVW---TRPNSRKGKKKAKQPAN 132
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 31 PIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSN 67
P P + KK ++W TRP+ G +AK +N
Sbjct: 97 PPPPSKKSKKKNSNSVW---TRPNSRKGKKKAKQPAN 130
>10_05_0024 + 8203010-8203948,8204042-8204683
Length = 526
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 26 AKKRTPIPGGPRG 38
A+KR P+P GPRG
Sbjct: 35 ARKRRPLPPGPRG 47
>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 KVTRPHGNSGSVRAKFKSNLPAQAM 73
KVT P G+ ++ KFK+ LP A+
Sbjct: 1007 KVTVPQGSLCNLNLKFKAGLPPDAV 1031
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 34 GGPRGKKTKLRAIWGKVTRPHGNSGSVRA 62
G PR + +++WG+ GNS +V A
Sbjct: 186 GAPRARIAVYKSVWGRGGAGSGNSATVLA 214
>01_06_0994 +
33653055-33653144,33653219-33653310,33653483-33653580,
33653758-33653913,33654009-33654628,33654721-33654794,
33654905-33655156,33655250-33655367,33655468-33655639,
33655729-33656270
Length = 737
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 34 GGPRGKKTKLRAIWGKVTRPHGNSGSVRA 62
G PR + +++WG+ GNS +V A
Sbjct: 242 GAPRARIAVYKSVWGRGGAGSGNSATVLA 270
>12_01_0285 + 2120130-2121204,2122842-2123116
Length = 449
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 33 PGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 74
P P KK+K + TRP+ G +AK +N A G
Sbjct: 95 PPAPPSKKSKKKNSNSVWTRPNSRKGKKKAKQPANALAGGSG 136
>11_03_0013 -
8957277-8957355,8957485-8957591,8957700-8957915,
8958191-8958907,8959483-8959656,8960292-8960546
Length = 515
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 30 TPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVR-AKFKSNLP 69
TP+P P + + GK++RP G V A F +P
Sbjct: 471 TPLPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLEIP 511
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 53 PHGNS-GSVRAKFKSNLPAQAMGH 75
P GN G+V KSN+PA MG+
Sbjct: 435 PFGNDLGNVDPDIKSNIPASYMGN 458
>03_01_0588 - 4354195-4355184
Length = 329
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 1 MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAI----WGK 49
MMVE A++ +H +V+RAKK R K + R + WGK
Sbjct: 59 MMVEEAEEEEAT----SEHKPFVFRAKKAAAAASSRRRKPAQYRGVRRRPWGK 107
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,464
Number of Sequences: 37544
Number of extensions: 98934
Number of successful extensions: 172
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 18
length of query: 93
length of database: 14,793,348
effective HSP length: 70
effective length of query: 23
effective length of database: 12,165,268
effective search space: 279801164
effective search space used: 279801164
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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