GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
         (93 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             89   6e-19
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   29   0.68 
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   2.1  
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          27   2.8  
SB_37490| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_34191| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   3.7  
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)           26   4.8  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                25   8.4  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 42/72 (58%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 3   VEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRA 62
           +EG  +R +  FY GK   +VYRAK +T   G    K TKLR IWGKVTR HGNSG VRA
Sbjct: 32  IEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK--KATKLRVIWGKVTRAHGNSGVVRA 89

Query: 63  KFKSNLPAQAMG 74
           KF+ NLP +AMG
Sbjct: 90  KFRHNLPPKAMG 101


>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 11  DAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLR 44
           D+ F+AG   +     K   P+ GGPR +  +LR
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLR 201


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 25  RAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGS 59
           R ++R P P  PR       + WG  T   GN+G+
Sbjct: 79  RRRRRRPPPCPPRNCAVSAWSSWGPCTHQCGNAGT 113


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 40  KTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 74
           +T+L+ + GK   P GNS  +R   K+NL A  +G
Sbjct: 192 RTELKIVIGK---PGGNSVEIRGGRKTNLSANELG 223


>SB_37490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 24 YRAKKRTPIPGGPRGKKTKLRAIWGKVT-RPHGNSGSVRAKF 64
          Y  K RT +PGG    KT+ R I GK+     G+ G  + KF
Sbjct: 3  YLEKPRT-VPGGGTPIKTQTRVIVGKINFNQGGHFGHDQQKF 43


>SB_34191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 36 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 72
          P GK+ +   ++GK    H  + S R K  SN+ + A
Sbjct: 61 PAGKEHRATPLYGKTLSFHVKAASFRLKLSSNVLSSA 97


>SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 23 VYRAKKRTPIPGGPRGKKTKLRAIWGKV 50
          + R  +  PI G PR ++  L  IWGK+
Sbjct: 49 IRRIIRLKPIRGKPRVRRISLARIWGKL 76


>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
          Length = 945

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 38  GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPA 70
           G+   L  +   ++ PHG+ GS R    SNL A
Sbjct: 697 GEGYNLTLVKKSISSPHGSIGSFRRSTSSNLEA 729


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 49  KVTRPHGNSGSVRAKFKSNLPAQ 71
           K TRPHG++ SV  K  S   AQ
Sbjct: 624 KKTRPHGSADSVPVKTPSKTKAQ 646


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 22   YVYRAKKR-TPIPGGPRGKK------TKLRAIWGKVTRPHGNS 57
            Y YR + R  P+PG  RG+K      T   A WG V R HG++
Sbjct: 4354 YRYRKQGRPVPVPG-KRGEKVDAYKNTSKYAGWGTVHRVHGDT 4395


>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 33  PGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 75
           P GPRG        WGK + P     S R  +K  +  +  GH
Sbjct: 105 PPGPRGSSGVQYVRWGKTSCP----SSARLVYKGRVGGEWYGH 143


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           +++EG + ++ +  +   H   V    +++ + GG +G+K+ ++    +V   + +  S+
Sbjct: 422 IVLEGTRHKDMSTDFESSHNTKV----EKSQLEGGKKGRKSGIKKSKSEVNESNTSRKSI 477

Query: 61  RAKFKSNLPA 70
           R     N+ A
Sbjct: 478 RGNKSQNVSA 487


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 14  FYAGKHCVYV--YRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQ 71
           F  G++C  V  Y     + IP  P     ++  +W +   PH +        KS +P  
Sbjct: 660 FMLGQNCFSVKCYTKDLCSTIPAQPSIYNPQIAYVWNRKMTPHKDKPEQAPSTKSAIPKP 719

Query: 72  A 72
           A
Sbjct: 720 A 720


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,217
Number of Sequences: 59808
Number of extensions: 105649
Number of successful extensions: 190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 13
length of query: 93
length of database: 16,821,457
effective HSP length: 70
effective length of query: 23
effective length of database: 12,634,897
effective search space: 290602631
effective search space used: 290602631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)