GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
         (93 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a ...   101   5e-22
BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.      101   5e-22
BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a ...   101   5e-22
BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a ...   101   5e-22
AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting ...   101   5e-22
X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for ...    98   3e-21
AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a ...    80   1e-15

>BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKVTR HGNSG V
Sbjct: 28  LKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMV 84

Query: 61  RAKFKSNLPAQAMGHR 76
           RAKF+SNLPA+A+GHR
Sbjct: 85  RAKFRSNLPAKAIGHR 100


>BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.
          Length = 110

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKVTR HGNSG V
Sbjct: 28  LKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMV 84

Query: 61  RAKFKSNLPAQAMGHR 76
           RAKF+SNLPA+A+GHR
Sbjct: 85  RAKFRSNLPAKAIGHR 100


>BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKVTR HGNSG V
Sbjct: 28  LKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMV 84

Query: 61  RAKFKSNLPAQAMGHR 76
           RAKF+SNLPA+A+GHR
Sbjct: 85  RAKFRSNLPAKAIGHR 100


>BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKVTR HGNSG V
Sbjct: 28  LKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMV 84

Query: 61  RAKFKSNLPAQAMGHR 76
           RAKF+SNLPA+A+GHR
Sbjct: 85  RAKFRSNLPAKAIGHR 100


>AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting
           protein 33 protein.
          Length = 110

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKVTR HGNSG V
Sbjct: 28  LKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMV 84

Query: 61  RAKFKSNLPAQAMGHR 76
           RAKF+SNLPA+A+GHR
Sbjct: 85  RAKFRSNLPAKAIGHR 100


>X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for
           ribosomal protein L35a. ).
          Length = 110

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 45/76 (59%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKVTR HGNSG V
Sbjct: 28  LKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMV 84

Query: 61  RAKFKSNLPAQAMGHR 76
            AKF+SNLPA+A+GHR
Sbjct: 85  LAKFRSNLPAKAIGHR 100


>AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a
          pseudogene 3 protein.
          Length = 96

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/72 (54%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 1  MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
          + +EG   +++  FY GK C  VY+AK  T IPG    K  K R IWGKVTR H NSG V
Sbjct: 27 LKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPGS---KPNKSRVIWGKVTRAHRNSGMV 83

Query: 61 RAKFKSNLPAQA 72
           AKF SNLPA+A
Sbjct: 84 AAKFHSNLPAKA 95


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,544
Number of Sequences: 224733
Number of extensions: 496016
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 73,234,838
effective HSP length: 70
effective length of query: 23
effective length of database: 57,503,528
effective search space: 1322581144
effective search space used: 1322581144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)