GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
         (93 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071732-1|AAL49354.1|  157|Drosophila melanogaster RH44960p pro...    97   2e-21
AY071136-1|AAL48758.1|  157|Drosophila melanogaster RE17737p pro...    97   2e-21
AE014297-251|AAF52027.1|  157|Drosophila melanogaster CG2099-PA ...    97   2e-21
AY070928-1|AAL48550.1|  867|Drosophila melanogaster RE03018p pro...    25   9.7  
AE014298-2493|AAF48675.2|  941|Drosophila melanogaster CG13003-P...    25   9.7  
AE014298-1307|AAF46467.2|  370|Drosophila melanogaster CG15370-P...    25   9.7  

>AY071732-1|AAL49354.1|  157|Drosophila melanogaster RH44960p
           protein.
          Length = 157

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EGA+ +    FY GK CVYVY+A+ +  +P  P  +KT++RA+WGKVTR HGN+G+V
Sbjct: 73  LKIEGARRKEHGSFYVGKRCVYVYKAETKKCVPQHPE-RKTRVRAVWGKVTRIHGNTGAV 131

Query: 61  RAKFKSNLPAQAMGHR 76
           RA+F  NLP  AMGHR
Sbjct: 132 RARFNRNLPGHAMGHR 147


>AY071136-1|AAL48758.1|  157|Drosophila melanogaster RE17737p
           protein.
          Length = 157

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EGA+ +    FY GK CVYVY+A+ +  +P  P  +KT++RA+WGKVTR HGN+G+V
Sbjct: 73  LKIEGARRKEHGSFYVGKRCVYVYKAETKKCVPQHPE-RKTRVRAVWGKVTRIHGNTGAV 131

Query: 61  RAKFKSNLPAQAMGHR 76
           RA+F  NLP  AMGHR
Sbjct: 132 RARFNRNLPGHAMGHR 147


>AE014297-251|AAF52027.1|  157|Drosophila melanogaster CG2099-PA
           protein.
          Length = 157

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EGA+ +    FY GK CVYVY+A+ +  +P  P  +KT++RA+WGKVTR HGN+G+V
Sbjct: 73  LKIEGARRKEHGSFYVGKRCVYVYKAETKKCVPQHPE-RKTRVRAVWGKVTRIHGNTGAV 131

Query: 61  RAKFKSNLPAQAMGHR 76
           RA+F  NLP  AMGHR
Sbjct: 132 RARFNRNLPGHAMGHR 147


>AY070928-1|AAL48550.1|  867|Drosophila melanogaster RE03018p
           protein.
          Length = 867

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 8   DRNDAVFYAGKHCVYVYRAKKRTPIPGGP 36
           D +D   Y      +VYR+    P+P GP
Sbjct: 401 DEDDPSLYYPPAYTFVYRSNYSNPVPPGP 429


>AE014298-2493|AAF48675.2|  941|Drosophila melanogaster CG13003-PA
           protein.
          Length = 941

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 8   DRNDAVFYAGKHCVYVYRAKKRTPIPGGP 36
           D +D   Y      +VYR+    P+P GP
Sbjct: 401 DEDDPSLYYPPAYTFVYRSNYSNPVPPGP 429


>AE014298-1307|AAF46467.2|  370|Drosophila melanogaster CG15370-PA
           protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 19  HCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHG 55
           H    Y AKK  P P  P  KK     I  +  RPHG
Sbjct: 116 HLTETY-AKKAAPPPPPPPKKKVNTYTIIEEQHRPHG 151


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,232,568
Number of Sequences: 52641
Number of extensions: 159815
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 6
length of query: 93
length of database: 24,830,863
effective HSP length: 72
effective length of query: 21
effective length of database: 21,040,711
effective search space: 441854931
effective search space used: 441854931
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)