GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002164-TA|BGIBMGA002164-PA|IPR001780|Ribosomal protein
L35Ae
         (93 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    85   9e-18
U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical p...    25   5.6  
AC024696-13|AAK84505.1|  346|Caenorhabditis elegans Hypothetical...    25   9.8  
AC006697-3|AAF60392.1|  346|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 84.6 bits (200), Expect = 9e-18
 Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 2/76 (2%)

Query: 1   MMVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSV 60
           + +EG  ++ DA FYAGK  VY+Y+A  +T   G      T+ RAIWGK+TRPHGN+G+V
Sbjct: 41  LKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAV 98

Query: 61  RAKFKSNLPAQAMGHR 76
           RAKF  N+P  A+G R
Sbjct: 99  RAKFHHNIPPSALGKR 114


>U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical
           protein F08D12.1 protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 38  GKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPA 70
           G+K +  AI+ KV   +    SV+A   +N+PA
Sbjct: 234 GQKAEALAIYEKVQAANHPDSSVKATITNNIPA 266


>AC024696-13|AAK84505.1|  346|Caenorhabditis elegans Hypothetical
           protein F07B7.1 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 7   KDRNDAVFYAGKHCVYVYRAKKRT 30
           KD+  A  Y+G +C++  RA  ++
Sbjct: 191 KDKKPAKAYSGSYCIFCRRASHKS 214


>AC006697-3|AAF60392.1|  346|Caenorhabditis elegans Hypothetical
           protein W09B7.1 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 7   KDRNDAVFYAGKHCVYVYRAKKRT 30
           KD+  A  Y+G +C++  RA  ++
Sbjct: 191 KDKKPAKAYSGSYCIFCRRASHKS 214


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,912
Number of Sequences: 27539
Number of extensions: 75300
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 12,573,161
effective HSP length: 69
effective length of query: 24
effective length of database: 10,672,970
effective search space: 256151280
effective search space used: 256151280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)