Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002163-TA|BGIBMGA002163-PA|IPR001304|C-type lectin
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    31   0.35 
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.47 
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    27   3.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   7.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.6  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 117 PPNPYKDKFKPSYPPPSQNQPIPVHTPQQPYAPGG 151
           P  P +    P+Y PP QN P   + P Q Y  GG
Sbjct: 14  PAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGG 48


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 92  PHPSHYNEWQASXXXXXXXXKIVNRPPNPYKDKFKPSYPPPSQNQPIPVHTPQQPYAPGG 151
           P P H ++ +A         +  + P    +D  KPSY  PS +Q  P   P++P  P  
Sbjct: 61  PPPKHASQLRAGGSSTGSTPRTAS-PAVGNQDYSKPSYSQPSYSQ--PSQPPKEPALP-- 115

Query: 152 LVDRVDETKPSKPQKQVS 169
              R   + PS+P  + S
Sbjct: 116 --SRGTPSLPSRPGSRPS 131


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 123 DKFKPSYPPPSQNQPIPVHTPQQP 146
           D  KP Y  P    P+P + PQQP
Sbjct: 504 DAAKPQYYIPKDPYPVPHYYPQQP 527


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/53 (30%), Positives = 18/53 (33%)

Query: 117  PPNPYKDKFKPSYPPPSQNQPIPVHTPQQPYAPGGLVDRVDETKPSKPQKQVS 169
            PP P      P  PPPS   P+P  +   P  P           PS     VS
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 117  PPNPYKDKFKPSYPPPSQNQPIPVHTPQQP 146
            PP P      P  P PS   P+P+ T   P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 117  PPNPYKDKFKPSYPPPSQNQPIPVHTPQQPYAP 149
            PP P      P  PPPS+  P+P  +   P  P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 113 IVNRPPNPYKDKFKPSYPPPSQNQPIPVHTP 143
           +V+  P  Y  +  PS P P+ + PIP   P
Sbjct: 186 VVSSDPKKYIPETVPSTPQPASSLPIPSSPP 216


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 9/63 (14%)

Query: 229 STDAINWKNANYACRKLKGNLLELDADDEKRHLFANLLSDNRL---KGADYWT---GGLN 282
           +++  N  NAN   + L+ N  +LD DD K     NLLS   L   KG+D  T   G L 
Sbjct: 504 NSNEFNEVNANDVHKSLRQNCAKLDFDDSKS---KNLLSVECLELDKGSDCSTPKSGSLT 560

Query: 283 PGL 285
           P +
Sbjct: 561 PSI 563


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,226
Number of Sequences: 5004
Number of extensions: 80339
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 17
length of query: 378
length of database: 2,362,478
effective HSP length: 74
effective length of query: 304
effective length of database: 1,992,182
effective search space: 605623328
effective search space used: 605623328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)