GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002163-TA|BGIBMGA002163-PA|IPR001304|C-type lectin
         (378 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.68 
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    25   1.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    25   1.2  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   8.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   8.3  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 128 SYPPPSQ--NQPIPVHTPQQPYAPGGLVDRVDETKPSKPQKQVSET 171
           S PPP Q   QP P  +P Q Y P  + +  + T PS   + VS T
Sbjct: 329 SPPPPYQISAQPTPSQSPNQIYQP--VTNLTNLTYPSYYNQDVSCT 372


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 152 LVDRVDETKPSKPQKQVS-ETDLYLLTAIEKLV 183
           ++ ++DET  SKP K V   T +YL+     LV
Sbjct: 102 ILSKIDETLNSKPLKPVKIRTKVYLVYCSSALV 134


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 152 LVDRVDETKPSKPQKQVS-ETDLYLLTAIEKLV 183
           ++ ++DET  SKP K V   T +YL+     LV
Sbjct: 98  ILSKIDETLNSKPLKPVKIRTKVYLVYCSSALV 130


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 223 SGCYYFSTDAINWKNANYACRKLKGNLLELDADDEKRHLFANLL 266
           + C +FS D     +AN   + +    +++D +DE+  + ++ L
Sbjct: 355 TACKFFSIDNALLFSANSTKKLIVKIRIDIDKEDERNEIISSAL 398


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 118 PNPYKDKFKPSYPPPSQNQPI 138
           P PY  +  P Y P  Q  P+
Sbjct: 26  PEPYPPRCPPIYEPSCQYSPV 46


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 127 PSYPPPSQNQPIPVHTPQ 144
           P YP P+   P P+ +P+
Sbjct: 163 PMYPFPAGQYPYPILSPE 180


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 127 PSYPPPSQNQPIPVHTPQ 144
           P YP P+   P P+ +P+
Sbjct: 55  PMYPFPAGQYPYPILSPE 72


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,036
Number of Sequences: 317
Number of extensions: 4301
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 378
length of database: 114,650
effective HSP length: 58
effective length of query: 320
effective length of database: 96,264
effective search space: 30804480
effective search space used: 30804480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)