Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002162-TA|BGIBMGA002162-PA|IPR002126|Cadherin
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    31   0.94 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.94 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    30   1.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   2.2  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    28   5.0  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    28   6.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   8.8  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 711 TIPATLKALAWDDHNKQSDLTNNDDNEISDTNNNLILDEYLKANIM 756
           T+  T+    +D H   + +T +  N IS TNN  I    +K++I+
Sbjct: 420 TLTETILTTTYDSHTFLTTITPSPSNSISYTNNTFIPSSSIKSSIV 465


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 363 PLQFYVSDRSFLDKFAINNAGEVILRRSLDYETTSNYFYQVMVTDSISNDTASIN 417
           P Q + S ++F+     +N+ +    +SLD  +  N F Q+ V D+ SN+ +S N
Sbjct: 335 PSQNFKSGKTFVSNANSSNSNDGSSSKSLDVGSFVNAFKQLNVNDNSSNNNSSGN 389


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 349  TLTTVPQNTEFRESPLQFYVSDRSFLDKFAINNAGEVILRR-SLDYETTSNYFYQVMVTD 407
            ++T +  N  F+   + FYV   + +D F  N+    +L R ++DY  + +Y   + + +
Sbjct: 2972 SVTEIFMNNVFQNLCVVFYVYTSADVD-FQTNSLSPALLNRCTIDYYHSWDYHSMLQIAN 3030

Query: 408  SISNDTASIN 417
             +  +T S+N
Sbjct: 3031 EVLQETISLN 3040


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 725 NKQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDNVKLTKIVNTD 784
           NKQSD+ N+ +  +S+ + +  LD+  + +I+P     M+   N    D   LTK  N++
Sbjct: 129 NKQSDILNSYERVLSNASVDSALDKKAEVDIIPFDKSVME-PKNITFNDKSGLTKFGNSN 187


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 731 TNNDDNEISDTNNNLILDEYLKAN 754
           T  ++N I+D NNN + DE+ K N
Sbjct: 16  TGKENNSIADGNNNKLKDEHYKHN 39


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 833 SVPIVPHDTGYSKPIAPILYDVAGPVLGIMYHDPPP 868
           S P V    G   P+      +AGPV G+ Y  PPP
Sbjct: 96  SGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPP 131


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 733 NDDNEISDTNNNL--ILDEYLKANIMPMYPLPMKYLTNHNLTDNVKLTKIVNTDFADDNQ 790
           + +N+ SD N+ L  ++++   A       L     T+H+ +DN+      ++D AD+++
Sbjct: 133 SSENKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESE 192

Query: 791 TSLSKEY 797
             LSK+Y
Sbjct: 193 --LSKKY 197


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,673,441
Number of Sequences: 5004
Number of extensions: 152635
Number of successful extensions: 318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 10
length of query: 900
length of database: 2,362,478
effective HSP length: 79
effective length of query: 821
effective length of database: 1,967,162
effective search space: 1615040002
effective search space used: 1615040002
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)